Archaeoglobus sulfaticallidus: Asulf_02229
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Entry
Asulf_02229 CDS
T02642
Name
(GenBank) ribosomal RNA-processing protein RRP42
KO
K12589
exosome complex component RRP42
Organism
ast
Archaeoglobus sulfaticallidus
Pathway
ast03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ast00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asulf_02229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ast03019
]
Asulf_02229
Messenger RNA biogenesis [BR:
ast03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Asulf_02229
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Asulf_02229
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF3889
Motif
Other DBs
NCBI-ProteinID:
AGK62182
UniProt:
N0BIN3
LinkDB
All DBs
Position
2018263..2019042
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AA seq
259 aa
AA seq
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MSDEILMDIRKDYVLSRLREGERIDGRKLDEVRKIQIETNIISKAEGSALVKLGDTQVMV
GIKMQVGEPFPDTPDKGIIITNAELVPLASPTFEAGPPDETSIELARIVDRGIRESEAVD
LHKLCIEEGEKVWIVFIDIHALDDDGNLVDASALAAISALLNTTVPAERFEVGDDFPLPV
RDLPVAVTSLVVGDKYLVDPNRDEMSVGNKLLTITTDKDDNIVAIQKSGSYLLDEEKFYE
LIDVSVRKAREIRELLKEV
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgaaattttaatggatatcaggaaggattatgttctctcaaggctcagagaa
ggcgagagaatagatggcagaaagcttgatgaggttagaaaaatccagattgagacaaac
ataatctctaaagcagaaggttccgcccttgtaaaacttggagatactcaggtcatggta
ggaataaaaatgcaggttggagagccattcccggatactccagataagggtatcataatc
accaatgctgagcttgttccgctcgcatctccaacattcgaagctggacctccggatgaa
acttcaatcgaacttgcgagaatagtggatagaggaatcagagagagcgaagctgttgat
ttacacaagctctgcatcgaggagggcgagaaggtatggatagtcttcatagacattcac
gcactcgatgatgatggtaatctggttgatgcctccgcattagcggcaatctcagccctg
ctgaacacaacagttccggctgaaaggtttgaagttggggatgattttcccctgccggta
agggatttacctgttgctgtaacatcactggttgttggtgataaatatctggttgatccg
aacagggatgaaatgagcgttggtaacaagttgcttacgatcacaactgataaggacgat
aacatagtggcaatacagaagagcggaagttacctgctcgatgaggaaaagttttatgaa
ctgatcgatgtaagtgtgaggaaagccagagagataagggagttgcttaaggaagtttaa
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