Asticcacaulis sp. DW145: ATDW_21870
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Entry
ATDW_21870 CDS
T10232
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
astd Asticcacaulis sp. DW145
Pathway
astd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
astd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ATDW_21870 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
astd03021
]
ATDW_21870 (rpoD)
Transcription machinery [BR:
astd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ATDW_21870 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
tRNA_U5-meth_tr
Motif
Other DBs
NCBI-ProteinID:
BEV11691
LinkDB
All DBs
Position
1:2436600..2438687
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AA seq
695 aa
AA seq
DB search
MSTATEKPEADTPSDGPLLDLTDAGVKKFIKNAKARGYVTMDELNKVLPSEEFTSEQIED
TLAMLTEMGVNVVDSEEEATEGGEIAVREETGGVVVAEKTSSYDRTDDPVRMYLREMGSV
ELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMIWREELESGRILLREIIDLEGTY
GGGPSEGPPPGALDDEGEEEDADAPIAMRAPEPVVKAPEPKPEPKPEPKVEAKKPEPKKK
ADGEEDDDDYVPMDEEEKKPQPEEEEEDDFDDGAGPSVSAMESELREGVMATLDAIAGEF
ETYRGLQERILGARLEGLPVDPADKAAYDEVTSAITRHLKTLKLNNQRIEALVEQLYTIN
KRLMSLEGRLLRLADSYGISRQEFLQNYYHRELDPQWTDKVRELGVRWQKFSDNEAGPIG
RIRADIIQLATDMGVAVDDYRRIVQTVQKGEREARQAKTEMVEANLRLVISIAKKYTNRG
LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE
TINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSH
LGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQ
QFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagcgacggaaaaacccgaagccgatacgccctctgacggcccccttctcgac
ctgaccgatgccggcgtcaagaaattcatcaagaatgcgaaggcccgcggctacgtcacg
atggacgagctgaacaaggtgctgccgtccgaagagttcacttcggagcagattgaagac
accctggccatgctcacagagatgggcgtgaacgttgtcgattccgaagaggaagcgacc
gaaggtggcgagatcgcggtacgcgaggaaaccggcggcgtggtcgtcgcagaaaagacc
tcgtcctatgaccgcaccgatgatcctgttcgcatgtatctgcgcgaaatgggctcggtc
gagcttctgtcgcgcgaaggcgaaatcgctatcgccaagcgcatcgaagccggtcgcgac
accatgatcagaggcctgtgtgaatcggctctgaccttcgaagccatcatgatctggcgc
gaggaacttgaatcgggccgcatcctgctgcgcgaaatcatcgaccttgaaggaacctat
ggcggtggcccgtccgaaggcccgcccccgggcgcgcttgacgatgagggtgaagaagaa
gatgccgacgcgccgatcgccatgcgcgcgccagagcctgtcgtgaaagctccagagcct
aagccggagccgaagccggagcctaaggttgaggcgaagaagccggaacccaaaaagaag
gcagacggcgaagaggacgatgacgattacgtcccgatggatgaggaagagaagaagcct
cagccggaagaagaagaggaagatgattttgacgacggcgccggtccttcggtgtcggcg
atggaatcggaactacgcgaaggcgtgatggcgacgcttgacgccattgccggtgagttc
gaaacctatcgcggtcttcaagaacgcattctgggcgcgcgccttgaaggcttgcccgtc
gatccggcggataaggcggcctatgatgaggtcacctcggccattacgcgccacctcaag
accctaaagctcaacaatcagcgtatcgaagctctggttgagcagctctatacgatcaat
aagcgcctgatgtcgctggaaggtcgtcttctgcgtctggccgactcctacggcatttcg
cgtcaggaattcctgcagaactactaccaccgcgagcttgatcctcagtggacggataaa
gtccgcgaattgggtgtacgctggcagaagttttccgataacgaagccggtcctatcggc
cggattcgcgccgacatcatccaactcgccaccgatatgggcgttgcggttgatgactat
cgccgcatcgtccagacggttcaaaagggtgaacgcgaagcgcgccaggccaagaccgaa
atggtcgaagccaatctgcgtctcgtgatctcgattgccaagaagtacaccaaccgcggt
ttgcagttcctcgatcttattcaggaaggcaatattggtcttatgaaggccgtcgataag
ttcgaatatcgccgcggctacaagttctcgacctatgccacctggtggattcgccaggcg
ataacacgttcgattgccgatcaggcgcgcaccatccgtatcccggtgcacatgatcgag
acaatcaacaagatcgttcggacctcgcgtcagatgctgcacgagatcggccgcgaaccg
accccggaagaactggcggagaagctggccatgccgctggagaaggtgcgcaaggttctg
aagatcgccaaagagcctatctcgctcgaaacccctatcggggacgaagaggattcgcac
ctgggcgatttcatcgaagacaagaacgccgtcctgcctatcgacgcggcgatccagtcg
aaccttcgcgaaaccaccacgcgcgtgctggcgtctctgacgccgcgtgaggagcgggta
ctgcggatgcggtttggcatcgggatgaacaccgaccacacacttgaagaggtgggtcag
cagttctcggtgacgcgcgaacgtatccgtcagattgaggcgaaagcgttgcgcaaactt
aagcaccccagccgctcgcgcaaattgcgctcgttcctagattcctag
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