Asticcacaulis sp. DW145: ATDW_28700
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Entry
ATDW_28700 CDS
T10232
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
astd Asticcacaulis sp. DW145
Pathway
astd02024
Quorum sensing
astd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
astd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATDW_28700 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ATDW_28700 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
astd03019
]
ATDW_28700 (hfq)
03036 Chromosome and associated proteins [BR:
astd03036
]
ATDW_28700 (hfq)
Messenger RNA biogenesis [BR:
astd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
ATDW_28700 (hfq)
Chromosome and associated proteins [BR:
astd03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
ATDW_28700 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
BEV12374
LinkDB
All DBs
Position
2:complement(757186..757434)
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AA seq
82 aa
AA seq
DB search
MSHEKKQNLQDTFLNSVRKSKTPLTIFLINGVKLQGIVSWFDNFCVLLRRDGQSQLVYKH
AISTIMPAAPVQLYEQEEDSDD
NT seq
249 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgaaaagaaacaaaacctgcaggacacgttccttaacagcgttcgtaaatcc
aaaacgcctctcaccatcttcctgatcaacggcgtcaagcttcagggtatcgttagctgg
ttcgacaatttctgcgtgctgctgcgccgcgacggtcagtcgcaactggtctataagcac
gcgatctcgaccatcatgcctgccgcgccggtgcaactgtacgagcaggaagaagactcg
gacgattaa
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