KEGG   Asticcacaulis sp. DW145: ATDW_28700
Entry
ATDW_28700        CDS       T10232                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
astd  Asticcacaulis sp. DW145
Pathway
astd02024  Quorum sensing
astd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:astd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ATDW_28700 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ATDW_28700 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:astd03019]
    ATDW_28700 (hfq)
   03036 Chromosome and associated proteins [BR:astd03036]
    ATDW_28700 (hfq)
Messenger RNA biogenesis [BR:astd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ATDW_28700 (hfq)
Chromosome and associated proteins [BR:astd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ATDW_28700 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: BEV12374
LinkDB
Position
2:complement(757186..757434)
AA seq 82 aa
MSHEKKQNLQDTFLNSVRKSKTPLTIFLINGVKLQGIVSWFDNFCVLLRRDGQSQLVYKH
AISTIMPAAPVQLYEQEEDSDD
NT seq 249 nt   +upstreamnt  +downstreamnt
atgtcccacgaaaagaaacaaaacctgcaggacacgttccttaacagcgttcgtaaatcc
aaaacgcctctcaccatcttcctgatcaacggcgtcaagcttcagggtatcgttagctgg
ttcgacaatttctgcgtgctgctgcgccgcgacggtcagtcgcaactggtctataagcac
gcgatctcgaccatcatgcctgccgcgccggtgcaactgtacgagcaggaagaagactcg
gacgattaa

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