Asticcacaulis sp. DW145: ATDW_32030
Help
Entry
ATDW_32030 CDS
T10232
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
astd Asticcacaulis sp. DW145
Pathway
astd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
astd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATDW_32030 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
astd03019
]
ATDW_32030 (rnr)
03016 Transfer RNA biogenesis [BR:
astd03016
]
ATDW_32030 (rnr)
Enzymes [BR:
astd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ATDW_32030 (rnr)
Messenger RNA biogenesis [BR:
astd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATDW_32030 (rnr)
Transfer RNA biogenesis [BR:
astd03016
]
Prokaryotic type
tRNA degradation factors
ATDW_32030 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
BEV12707
LinkDB
All DBs
Position
2:1122920..1125301
Genome browser
AA seq
793 aa
AA seq
DB search
MKTPSTPRPAQKKPDGLPDDDTLLEVLKSARELDVGALARQFGLKGEDRRALRQRLKQLA
DSGKLNKSGRKSFGAVGALPETGVAEVVERDIDGDLWVKWGQRNGMSDHPKLKHKPPLAR
LAPLKKAIAQTPPAVGDRIYVRFEQTSEEWIAHLVKVLDQGAPKLVGVVRIGKARKGPRD
IRLESVDRKSKDSYTLVAGAIDALEDGDVVIAAPQGGNHRYGPKPARLIEVIGKEDSPRI
ASIMAIHAHGLKVGFDSSTEAEAEAAQAPDLKGREDLRHLPLITIDPQDARDHDDAVYAH
ADDDDSNPGGYVVWVAIADVAHYVKSGSSLDRDAREKGNSTYFPDRVEPMLPHVLSSGLC
SLQEGENRAALAVRMVFNAEGNKIGHQFVRGLMRSAAKLSYEQAQAAIDGTPDDKTQPIL
DTLLRPLWAAHACLSRGRRERQPLAINSPERKVQLDSEGNVVAITARVSLEAHQLIEEMM
IQANVCAAETLEKHRTPLIYRVHEQPSLEKVGNLADFLATIGLPWNKGEPPRTERFNQLL
NSQKDGPHAEIINEVVLRTQMQAHYSAENFGHFGLNLDRYAHFTSPIRRYADLIVHRALI
RALKLGDDGLTDYEVKTMADTAEHITATERRSMQAEREAIERYVAAFLEDKVGATFEGRI
VGVTRFGLFVKLTETGADGIIPASSFVDDYYIHDDTAHALVGERHHRRWTLGRKIEVQLL
EAMPMTGGLVFKALSEPEAPDPNAPRPRLGVRSRVDTALRRKGPGGPKGSPKTGKARQKG
ITEKSKTKKGKRR
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaccctctacgccccgcccagcacaaaaaaagcctgatggcctgccggatgac
gacaccctcctcgaagttctaaagtccgcccgtgagctggatgtcggcgccctggcccgg
cagttcggcctcaagggcgaagaccgccgcgcgctgcgccaaaggctcaagcaactggcc
gactccggcaagctgaacaagagcgggcgcaagtcgttcggggccgtcggtgccctgccc
gaaaccggcgtcgccgaagttgtcgagcgcgacatagacggcgatctgtgggtcaagtgg
ggccaaagaaatggaatgtcggaccatccgaagctgaagcacaagccgcctctggcccgc
ctcgccccgctgaaaaaagccatcgcccagacacccccggccgtcggcgatcgcatctat
gtgcgctttgagcagacctctgaggagtggatcgcccacctcgtcaaggtgctggatcag
ggcgcgcccaagctggtcggcgtcgtgcgcatcggcaaggcgcgcaagggcccgcgcgac
atccgcctcgaaagcgtcgatcgcaagtcgaaggacagctacaccctcgtcgccggggcc
atcgacgccctcgaagacggcgatgtggtgatcgccgcgccgcaaggtggcaaccaccgc
tatggccccaagcccgccaggctgatcgaggtgatcggcaaggaagactccccgcgcatc
gcctcgatcatggccatccatgcccacgggctgaaggtcggctttgactcatcaacagaa
gccgaggctgaggccgcgcaggctccggacctcaaagggcgcgaggacctgcgccacctg
ccgctgatcaccattgacccgcaggacgcccgcgaccacgacgacgccgtctatgcccat
gccgatgatgacgacagcaatcccggcggctacgtcgtgtgggtggccattgctgacgtg
gcccactacgtcaaatcgggctcgtctctggatcgcgacgcccgcgaaaagggcaattcg
acctacttcccggaccgcgtggagcccatgctgccgcacgtgctgtcgtcgggcctgtgc
tcgcttcaggaaggcgaaaaccgcgcggccctggccgtgcgcatggtcttcaatgccgag
ggcaacaagatcggccatcagttcgtgcgcggcctgatgcgctctgccgccaagttgtcc
tatgagcaggcgcaggcggccatcgacggcacgcccgacgacaagacgcaaccgatcctc
gatacgctcctgaggcccctgtgggccgcgcacgcctgcctgagccgcggccggcgcgag
cgtcagcctctggccatcaactcgcctgagcgcaaggtgcagctcgattccgagggcaat
gtcgtggccatcaccgcccgcgtcagccttgaggcacatcagctcatcgaagagatgatg
attcaggccaatgtctgcgccgccgagacgctggaaaagcacagaacgccgctgatctat
cgcgtgcacgaacagcccagcctcgaaaaggtcggcaatctggccgattttctggccacg
atcggtctgccgtggaacaagggcgagccgccgcgcaccgagcgcttcaatcagttgctt
aacagccagaaggacgggccgcacgccgaaatcatcaatgaggtggttttgcgcacccag
atgcaggcccattacagcgccgagaatttcggccacttcggcctcaatcttgaccgctat
gcccacttcacctcgccgatccgccgctatgccgacctgatcgtgcaccgcgcgctgatc
cgcgcgctcaagctgggggacgacggtctgaccgactatgaggtcaagaccatggccgat
acggccgagcacatcaccgccaccgagcggcgctcgatgcaggccgaacgcgaggccata
gagcgctacgtggcggccttccttgaggacaaggtgggggcgacgtttgaaggccgcatc
gtcggcgtcacgcgctttggcctgttcgtcaagctgaccgaaacgggggccgacggcatc
atccccgcctcgtccttcgtggatgactactatatccatgacgacacggcccacgcgctg
gtgggggagcgccatcaccgccgctggacgctggggcgcaagatcgaggtgcagttgctg
gaggccatgccgatgaccggcgggctggtcttcaaggccctgtccgagcccgaagccccc
gatcccaacgccccgcgcccgcgtctgggcgtgcgctcgcgagtcgatacggcgctgcgc
cgcaaaggaccgggcgggccgaagggtagccccaaaacgggcaaagcgcgccagaagggc
attaccgaaaaatcgaagaccaagaagggcaagcggcgctaa
DBGET
integrated database retrieval system
