Anopheles stephensi (Asian malaria mosquito): 118503183
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Entry
118503183 CDS
T08252
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
aste
Anopheles stephensi (Asian malaria mosquito)
Pathway
aste03008
Ribosome biogenesis in eukaryotes
aste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aste00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118503183
09123 Folding, sorting and degradation
03018 RNA degradation
118503183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aste03019
]
118503183
03009 Ribosome biogenesis [BR:
aste03009
]
118503183
03016 Transfer RNA biogenesis [BR:
aste03016
]
118503183
03036 Chromosome and associated proteins [BR:
aste03036
]
118503183
Messenger RNA biogenesis [BR:
aste03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118503183
mRNA degradation factors
5'-3' decay
5' exonucleases
118503183
Ribosome biogenesis [BR:
aste03009
]
Eukaryotic type
Pre-60S particles
RNases
118503183
Transfer RNA biogenesis [BR:
aste03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118503183
Chromosome and associated proteins [BR:
aste03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118503183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
ATP-synt_F
Motif
Other DBs
NCBI-GeneID:
118503183
NCBI-ProteinID:
XP_035892052
LinkDB
All DBs
Position
2:41020420..41027129
Genome browser
AA seq
1693 aa
AA seq
DB search
MGVPKFFRYMSERYPCLSELLRENQVPEFDNLYLDMNGIIHNCSHPNDGDISFRIEEDAI
FEAIFHYVEYLFKLIRPQKVFFIAVDGVAPRAKMNQQRGRRFRSALEATELLEKAKKDGE
PIPSDSPFDSNCITPGTPFMVRLQHALEHFIQVKIATDRLWKACTVILSGHETPGEGEHK
IMEYIRHAKAQPGFNPNLRHCLYGLDADLIMLGLCTHERYFSLLREEVKFGKNDKKTTVL
KDIRFYLLHLTLLSEYLELEFASIRNWLRFPFDIHKLIDDWVLMGYLVGNDFIPHIPHLH
INENALPILYSAYKDVLPEMDGYINEGGILNLPRLQLFMRRLARVDRDMFLERYTELKYL
EDKCGKNNLEAFDVNAEEIIASREMDKDLVALIMSSEMLDSEGEDVDEGGPVTQDDIEND
PELFEKEFHNYKRNYYMTKMGYADFTEEVRAEQTECYIRALQWTLHYYYRGVVSWSWYYP
HHYAPFISDVDNFADLKLEFEMARPFLPFQQLLSVLPAASKQHLPPAYHDLMINPNSSVY
DFYPTSFTTDLNGKQQAWEAVVLIPFIDEKRLLKAMGPCDAFLTDEEKQRNVHGPMLQYQ
YDAEQRTPLEARYGFSRIDVLPVRRSEIWRDNLRVAESKLVLGPSKGAILHGYAKGFPTF
THLPHHGELRHMGVKIFNFPSKNESMVAVLDTPATPADQPGTEELAKKLLGKIVHVSWPH
LMEAIVVRVSDRSKTYECNSAPSKSDERSFHLSCHGIKQHNSNRLAIDVGPITQLVHVKI
AIGTEYVLQDYGFALKKLWNNIDMAYPAQAIVCDLQDVMKQEKSYLDMKEMFPSDCAVFL
RATEFYGSMGSAVDFSASTNRLQARFLVYEEPDMSPVFYTHRQTLQNYRNVNDTAATLGI
SVGTLLQLTGSLLVAPGGHRALNVGEKTVNIGLRLRMMSKDEETVGYCRKVNKTWLFSDK
TVALVEKYLEQCPSLPEKINSHGKGKYMFETDLFGEGNEGKLKELSDWLNMQDHMHAERR
SCGIVALEQQAIAKLSEIVDKYQELHQPTVKTMFVDPRELYRPGMKKARTIDPSASFELL
DRVIVVQDAEDVPVGARGTIIGMHRVSDPNPVRREAIGQVDVNLEILFDKPFYKGVSIYN
IPNTEKRVARLVQGAVLNISYGKALHGYRYNVQCESNLSEEVQAMVAAATDTSIGSSDFT
AKMDSIQKRLNERVGKRTNAWNGAPVSVPTGSAAYQSTGTQKEATATEQPRKVEFERLWK
KLKESSNHSTALFDDNDIESFVQSPRQISGVQNNGTINERSTVEKPLTALSGRGKGEAVT
SNGSKRVEQWSDDNMAGYLKQMLRIDDKRVEGKDQVVTPPASIAVPAPASLPKPPIQWQT
MSSSKSASKSGQDCIHDQHIPQIAQPVQGPLGFRPMLGPPAHFPNHHQQQQQQPPPPLQL
GPRHMLPGFALAGVRMPNQHHHPFGGFQQPPFHAQRMSIRPPMPFANRMEVGKIHQHHQQ
EQHYRQPQQTLQHHQQQQPSTWGPKGPQHLTYNQNNPAGKGAFVPLQAMKKTAKSKAGTA
LQKHNNDTGTPSANNDSSAGSKEVKHHQQVAVVQPAASNSTSSFNEKNARRRQEVEQKQA
EVKQGFASFLSQKSDTKQLKNRQNSVAAGKKVPVADAKDNDDKHGGDTTVVKNAKSRPKT
RIAARFGEIPADG
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccaaagttttttcgctacatgagcgaaagatatccttgcttgtccgagttg
ttgcgtgaaaaccaggtgccagaattcgacaacctctatctggacatgaacggtatcatc
cacaactgttcacacccgaacgatggagacataagcttccggatcgaggaggatgcaata
ttcgaggccatatttcattatgtcgagtacctgttcaagctgattcgaccgcagaaggtt
ttcttcattgccgtcgacggtgtggcaccgcgcgccaaaatgaaccaacagcgcggtcgc
cgtttccgctctgcgctggaagcaacggaactgttggaaaaggcgaagaaggacggtgaa
ccaatcccgtcggacagtcccttcgacagtaactgcatcacgcccgggaccccattcatg
gtgcggctgcagcacgccctggaacattttattcaagtgaaaatagccaccgaccggctg
tggaaagcgtgcaccgtgatactgagcggccatgagacacccggtgagggcgaacacaaa
atcatggagtacattaggcacgcgaaagcgcagcccgggtttaatccaaacttaagacat
tgcctgtacggccttgacgcggatctaattatgctagggttgtgcacacatgagcgatat
ttttcgttgctgcgggaagaggtgaagttcggcaaaaatgacaaaaaaacgacggttctg
aaggatatacgattctatctgttgcacttgacgctgttgagcgagtatctggagctggag
tttgccagtatccgcaactggcttcggttcccgtttgacatacacaagctgatcgatgac
tgggtgctgatggggtacctagtaggcaacgatttcattccgcacataccacatctgcac
atcaacgaaaatgcacttcccattttgtacagtgcgtacaaggatgtgctgcccgagatg
gacggatacattaacgagggcggaatactgaaccttccccggctgcagttgttcatgaga
cgtttggcgcgcgttgatcgggacatgtttctcgaacgctacaccgagcttaaatatttg
gaggacaagtgtggtaaaaacaatttggaagcgttcgatgtgaatgcagaagagattatt
gcgtcgcgggaaatggacaaagacttggtagcactgatcatgtcgtcggaaatgttggat
tccgaaggggaagacgtcgacgaaggaggaccagtcacgcaggatgatatagagaatgac
ccggaactgtttgagaaggagttccacaactacaaacgaaattattacatgacgaagatg
ggatatgcggatttcacggaggaggttcgggcggagcaaaccgaatgctacatccgagca
ctgcaatggacgctccattactattatcgaggcgtcgtatcatggtcctggtactaccct
caccattacgcacccttcatcagcgacgtggacaactttgccgatctcaagctggagttt
gaaatggcacgtccgttcctaccgtttcagcagctgcttagcgtgctgcctgcggccagc
aagcagcatttgccaccggcctaccacgatctcatgatcaacccgaacagctcggtgtac
gacttctatccgaccagtttcaccactgatctgaacggtaagcaacaggcatgggaagcg
gtcgtgctgattccgtttatcgatgagaagcgactgctaaaagcgatgggtccttgcgat
gcgttccttacggacgaggagaaacagcgcaacgtgcatgggccaatgctgcaatatcag
tacgatgccgagcagaggacaccactagaagcaaggtacggattttcgcgcatcgacgtg
ctgccggttaggcgaagcgaaatatggcgcgataacctgcgcgtggcagaaagcaagctg
gtgctgggaccgtccaagggcgccatactgcacgggtacgcgaaaggattccccacgttt
acccatttaccgcatcacggcgaactgaggcacatgggagtgaagatttttaactttccc
agcaagaacgagagtatggtggctgtgctggatacaccggctacaccggctgaccaaccg
ggcacagaggagctggccaaaaagttgttgggcaaaatcgtgcacgtcagctggccccat
ttaatggaagcgatcgttgtgcgggtgtcggatcgatcgaaaacgtacgagtgcaacagc
gcaccatccaaaagcgatgaacgatcgtttcatctgtcctgtcatgggattaaacagcac
aatagtaatcgcctggcaatcgatgtggggccgatcacgcagttagtgcacgtaaaaatt
gccatcggtacggagtatgtgttgcaggactatggtttcgcgctgaagaagctgtggaac
aacattgacatggcgtatccggcgcaggccattgtttgcgacttgcaagacgtgatgaag
caagagaagtcatatctggacatgaaggaaatgtttccgtcggactgtgcggtattcttg
cgggcgaccgagttctacggcagcatgggaagcgcggtcgacttttcggcctccacgaac
cgtttgcaggcgcggtttttggtgtacgaggaacccgatatgtccccggtgttttacacg
catcgccaaacgttgcagaactaccggaatgtgaacgatacggctgcaacgctcggcata
tcggtgggcactttgttacagctgacgggttcgttgttggtggcgccgggcggacatcgt
gcgcttaacgtaggcgagaaaaccgtcaatatagggctgcggctgcggatgatgtcgaag
gacgaagaaacggtcggttattgtagaaaggtcaacaaaacgtggctgttttcggacaag
acggtggcgctggtagaaaagtatctggagcagtgtccctcattacccgaaaagatcaat
tcccacggcaaaggaaagtatatgttcgagacggatttgttcggcgaagggaacgagggc
aagctgaaggagctgagcgattggcttaacatgcaggaccacatgcacgcagaacgacgc
agctgcggcattgtagcgctggaacagcaggctatcgcaaagttgagcgagattgtggac
aagtatcaagagctgcaccaacccaccgtgaaaaccatgtttgtcgatccaagggaacta
tatcggcccggcatgaagaaggcgaggacgattgatccgtcggcttcgtttgagctgctc
gatcgtgtgatcgtcgtacaggacgcggaagatgtgccggtcggcgcgcgcggtaccatc
atcggtatgcaccgcgtgtcggatcccaatccggtgcgccgcgaagctatcgggcaggtg
gacgtgaatttagaaatattatttgacaaaccgttctacaagggcgttagtatttacaac
atacccaacacggagaagcgtgtggcgcgccttgtgcagggcgccgtgttgaacatttca
tatggtaaagcattgcatggttaccgttacaatgtgcagtgcgaaagtaacctctctgag
gaggtgcaagcaatggtggcagccgcaacagacacaagcataggatcgagcgactttacg
gcaaagatggattccattcagaaacgcctgaatgaacgcgttggcaagcgtaccaacgct
tggaacggtgctccagtcagcgtaccaacagggtcggcggcgtatcagagtacaggcacc
cagaaggaggcaacggccaccgaacaaccgagaaaggttgagtttgaacggctgtggaaa
aaactaaaggaatcgtccaatcattctacagctttgtttgatgataacgacattgaaagc
tttgttcaatcgccccgccaaatctcaggcgttcagaacaacggcacaatcaatgaacga
tcaacggtagaaaaacctttgacggctttgagtgggagagggaaaggtgaggcggtcacc
agcaatggttccaagcgagttgaacagtggagtgacgacaatatggcaggatatttgaag
caaatgcttcgcattgacgataagcgggttgagggcaaggatcaagtggttactccgcca
gcgagcattgccgtgcctgcaccagccagcctgccgaaaccaccgattcaatggcaaacg
atgtcctcatcgaaaagtgcttccaagagcggacaggactgcatacacgaccagcacata
ccacagatagcacagcctgtccagggtccattgggtttcagacctatgctgggtccacca
gcccattttccgaatcaccaccagcagcaacagcagcagccgccgccgccgttacagctc
gggccgaggcacatgctcccggggttcgctttggcgggggtgcgtatgccgaatcagcac
catcatccgttcggtggatttcagcaaccaccattccatgcccagcgtatgtccatccgg
cctcccatgccttttgcaaatcgcatggaagtaggcaaaatacatcagcaccatcagcaa
gagcagcactaccgacagccccaacaaaccctacagcaccaccagcagcagcaaccctcg
acatggggtccaaaaggacctcagcatttgacgtacaaccagaataatccagctgggaaa
ggcgcatttgtgcctttgcaggcaatgaaaaagactgccaagagtaaggcgggaactgct
ttacagaagcataataacgatactggcacgccttccgccaacaatgatagttcggctggg
agcaaagaagtcaagcatcatcagcaagtcgctgttgtgcaaccggctgctagcaacagc
accagcagcttcaatgagaagaatgcccgccggcggcaggaggtagaacagaaacaggcg
gaagtgaagcaagggtttgctagcttcctctcacaaaaatcggacaccaagcagctaaag
aacaggcagaatagtgtggccgcgggcaaaaaggtgccggtggcggatgcaaaggataac
gacgacaagcatggtggtgacactaccgtcgtcaagaatgccaaatctagaccaaaaact
cggatcgctgcacggtttggtgaaattcctgccgatggataa
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integrated database retrieval system
