Anopheles stephensi (Asian malaria mosquito): 118513223
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Entry
118513223 CDS
T08252
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aste
Anopheles stephensi (Asian malaria mosquito)
Pathway
aste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118513223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aste03019
]
118513223
03041 Spliceosome [BR:
aste03041
]
118513223
03009 Ribosome biogenesis [BR:
aste03009
]
118513223
03016 Transfer RNA biogenesis [BR:
aste03016
]
118513223
Enzymes [BR:
aste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118513223
Messenger RNA biogenesis [BR:
aste03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118513223
Spliceosome [BR:
aste03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118513223
Complex C
U4/U6.U5 tri-SnRNP related factors
118513223
Ribosome biogenesis [BR:
aste03009
]
Eukaryotic type
Pre-60S particles
Helicases
118513223
Transfer RNA biogenesis [BR:
aste03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118513223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Death_3
nSTAND3
ATPase_2
DUF7677
Motif
Other DBs
NCBI-GeneID:
118513223
NCBI-ProteinID:
XP_035914643
LinkDB
All DBs
Position
3:71995787..71999307
Genome browser
AA seq
1039 aa
AA seq
DB search
MSTVDDLFSVFEQENDDDNGPVPVVMVEPPAVAASVNKSNRDDSDEKGEPAATGRNKRDL
EVIQTLSDDEQVPKKAKVESILDDINLDNIESRIKVHTIQSPEACTHEVAVYPDQKYMPL
KPATGKPAKEYAFVLDPFQREAILCIENSQSVLVSAHTSAGKTVVAEYAIAKSLADKQRV
IYTTPIKALSNQKYREFHEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMRE
VGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHLHKQPCH
VVYTDYRPTPLQHYLFPAGGDGIHLVVDERGQFKEDNFNTAMNVLQTAGEAAKGDQKGRK
GGLKASNQGETNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNSTMEKKLVD
EVFNNAMDVLTEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFA
TETFAMGLNMPARTVLFTSPRKFDGKDFRWVTSGEYIQMSGRAGRRGLDDKGIVILMIDE
AVSPMVGKDIVQGRPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPDI
YKRVQRKQKQLLAVEIKDEQSIVSYHHIREQLDRLGQEFREYITRPVYLVPFLQPGRMIK
IQSDAGEFEWGIIVNFKKENASSKQNPLKTEQKVVIDVLLHVADGFEKEGIPKPCPPGKR
GSVEVVPVLHKLVSRISSLRVYYPNDLRPADNRRSVLKTIEEVKKRFPQGPPLLNPITDM
HIQEKEFQGIVEMIDKFEKRLFAHPLHESSGLERLYAQYMNKLELEKELRNEKNALREAR
SLLQMSELKHRKRVLRRLGYCTTADVIEFKGRVACELSCADELLITEMVFNGTFTDLTPA
QSCALLSCFVCDEKSSEMPAATQELSGPLRQMQDLARRIAKVSNECKVEVDEERYVDSFK
PFLMDVVLCWCKGATFAQLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNTDLENKF
SEAIRLLKRDIVFAASLYL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactgtggacgatttgtttagcgtgttcgaacaggagaacgatgacgacaatggg
cccgtgccggtcgtgatggttgaaccaccggccgtggccgcgtccgtaaataaatcgaac
agagatgatagcgatgaaaaaggtgagccagctgcaacgggacgtaacaagcgcgacctg
gaggtaattcaaacgttaagcgacgacgaacaagttcccaagaaagccaaggtggaatcg
atactggacgacattaacctggacaacattgagagtcgcatcaaggtgcacacgatacag
tcgccggaagcgtgcacgcacgaggtggccgtatacccggaccagaagtacatgccactg
aaacccgccaccggcaaaccggccaaggagtacgccttcgtgctggatccgtttcagcgc
gaagcgatcctgtgcatcgaaaacagtcaatccgtactggtgtccgcccatacgtccgcc
ggtaaaacggtggtggcggaatatgctatcgcaaaatctctggccgacaagcagcgcgtc
atctacaccacaccgattaaggcactttccaaccaaaagtaccgcgagtttcacgaagag
tttaaagacgtcggtctggtgacgggtgatgtgacgatcaatccgagcgcttcctgcctg
attatgacgacggaaattctgcgcaacatgctgtaccgtggttcggagattatgcgcgag
gtcgggtgggtcgtattcgacgagattcattacatgcgcgacaaggagcgcggtgtggtg
tgggaagaaacgctcatcctgctgccggacaacgtgcactacgtgttcctgtccgccacg
attcccaacgcacgccagtttgcggaatgggtgtgccatctgcacaaacaaccgtgccat
gtggtgtacacggattatcggccgacaccgctgcagcactacctgtttccggccggtggc
gatgggatacatctggtggtggatgagcggggccagtttaaggaggacaactttaacacg
gccatgaacgtgctgcagacggcgggggaagcggcaaagggcgatcaaaagggtcggaag
ggtggcctgaaagcgtcgaatcagggcgagacgaacattttcaagattgtgaaaatgata
atggagcggaactttgcccccgtcatcatattctcgttcagcaagaaggattgcgaggtg
tacgcgatgcagatggcaaagctggactttaattcgacgatggagaagaagctggtcgac
gaggtgtttaacaacgcgatggatgtgctgacggaggaggatcgtcagctgccgcaggtt
gagaacgtgctgcctctgttgcgccgcggaatcggcatccatcacggtggattgctgccc
attctcaaggaaacgatcgagatcctgttcggcgaaggtttgattaaggcactgtttgca
acggaaacgttcgcgatgggattgaacatgccggcccgtacggttctcttcaccagcccg
cgcaagttcgatggcaaagacttccgctgggtaacgtcgggtgaatacattcaaatgtcg
gggcgtgccggtcgacgtgggttggacgacaagggtatcgttatcctgatgatcgacgaa
gccgtttcgccgatggttggcaaggacattgtgcagggccgtccggatccgatcaattcc
gcattccatctaacgtacaacatggtgctgaatctgctgcgcgtcgaagaaatcaacccc
gagtacatgctggaacgatcgttcttccagtttcagaatcaatcctccataccggacatt
tacaagcgtgtgcagcgcaaacagaagcaactgctggcggtggaaattaaggacgagcag
tcgatcgtttcgtaccaccacatccgcgagcagttggatcggcttgggcaggagttccgg
gagtacataacgcgaccggtttatttggtcccgttcctgcagcctggtcgtatgataaag
atccaatcggatgcgggcgagttcgagtggggcatcatagtgaacttcaagaaagagaac
gctagctcgaagcaaaatccgctgaaaaccgagcagaaggtggtcatcgatgtgttgctt
cacgtcgcggatggattcgagaaggaaggcatccccaaaccttgtccaccgggaaagcgt
ggatcggtagaggtagttcccgtgctgcacaagctcgtgtcgcgcatcagctcgctgcgt
gtgtactatccgaacgatctgcgtccggcggacaatcgtcgatcggtgctgaaaacgatc
gaggaagtgaagaaacggttcccgcagggtcctccactactaaaccccataaccgacatg
cacatccaggagaaagaattccaaggtatcgtcgagatgatagacaagtttgagaagcgc
ctcttcgctcacccgctgcacgaatcgtccggtctcgaacgattgtacgcccagtacatg
aacaagctggagctggagaaggaactacgcaacgaaaagaacgctctccgcgaagcacgc
agcctgctgcagatgagtgagttgaagcatcggaagcgtgtgcttcgccgactcggatac
tgtacgacggccgatgtgatcgagtttaagggacgggtggcgtgcgagcttagctgtgcc
gacgaactgctcatcacggagatggtgtttaacggtacgtttaccgacctaacgcctgcc
caatcgtgcgctttgctgagctgcttcgtgtgcgacgagaagagcagtgagatgccggcc
gccacgcaggaactgtcggggccattgcgtcagatgcaggatctagcacgccggatagcg
aaagtgtcgaacgagtgtaaggtggaggtggacgaggagcggtacgtcgattcgttcaaa
ccgttcctgatggatgtggtgttgtgctggtgtaagggcgctacctttgcccagctctgc
aagatgacggacattttcgaggggtccattattcggtgtatgcgtcggctggaggaactg
ttgcgccagatggtacaggcgtcgaaaacgatcggcaacacggatctggagaacaagttc
tccgaagcgattcggctgctgaagcgtgatatcgtgttcgcggcgtcgctttacttgtaa
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integrated database retrieval system
