Anopheles stephensi (Asian malaria mosquito): 118517557
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Entry
118517557 CDS
T08252
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aste
Anopheles stephensi (Asian malaria mosquito)
Pathway
aste03013
Nucleocytoplasmic transport
aste03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aste00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118517557
03015 mRNA surveillance pathway
118517557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aste03019
]
118517557
Enzymes [BR:
aste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118517557
5.6.2.5 RNA 5'-3' helicase
118517557
Messenger RNA biogenesis [BR:
aste03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118517557
mRNA cycle factors
Common to processing body (P body) and stress granule
118517557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NAT10_TcmA_helicase
NPHP3_N
DEAD
AAA_22
ATPase
nSTAND3
SRP54
AAA_32
AAA_16
AAA_5
Motif
Other DBs
NCBI-GeneID:
118517557
NCBI-ProteinID:
XP_035919692
LinkDB
All DBs
Position
2:93139617..93144662
Genome browser
AA seq
1161 aa
AA seq
DB search
MSVDAYDGTTGSQSLTFVDTEENFFVGADSQGTEYDFRDFTIPSQSQTQASQLDHLGGSS
QVNGFGRRIGVDPTKLSGITSAIGELQFEEDEDELDPVENKDLPPHACRYCGIHEPSTVV
MCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHADGPLGETVLECYSCAVRNVFVLG
FIPAKSDSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKIPTEQDQLRAR
KVSAAQINKLEELWKENVDATFQDLEKPGIDKEPQQVQLRYVDGYQYQNTFGPLVNLEAD
YDEKLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDELKLRYVGELHKPWS
CIGHVIKVPDNYGDDVGLELKHNHHAPVERTSNFSVDFIWKGTSFERMQQALRKFAMDAK
SVSNYIYTRLLGNVRADGAEEVLFRLNLPKHFSAPNLPDLNRSQVYAVRHALQRPLSLIQ
GPPGTGKTVTSATIVYQLARLNSGPILVCAPSNTAVDQLTEKIHRTNLKVVRVCARSREA
IDSPVSFLALHNQIRNMAQNSELKKLQQLKDETGELSLSDERRYRSLKKQAERELLEAAD
VICCTCVGAGDLRLQRIKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAAKAGLSQSLFERLVALGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCADERK
LKVDFPWPSPDCPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGIKPEQIGI
ITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGF
LNDPRRLNVALTRAKYGIIIVGNPKVLSKQELWNHLLNFYKDKKVLVEGSLNNLKESMIQ
FTKPKKIINTLNPGMHFMTNAMYDAKEVLGGGYFDRXTLDLQPAYAHNPLAGYGSANNYH
QQGGFMDVTGHGSTASANTPLDAFMRKVHDPIGYISPQRSLPAVSNMPVPVGMFINMSSA
PSRFYQQQQQAAMQAAKQTRRPVVGKTSSQLLAAGSGSVSAGGKSGRPRPIGPPSSSSSG
GGINHGSNIAGSSLTQGMSQNMSQPGFSLSQQAEFSQDYMGDYQSQMDNILSQESNYHSQ
SGPGDRLAFELHSSSQFSQPY
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcttacgacggaacgactggttcccaatcgctgacctttgtcgatacg
gaagagaatttcttcgtgggagcggattcgcagggtacggagtacgattttcgcgacttt
accattccttcgcaaagtcaaacccaagcctcgcagctcgatcatcttggcggaagcagt
caggtgaatggattcggtcggaggattggagtagatccgacgaagctgtccggcattacc
tctgctatcggtgagctgcagttcgaggaggacgaggacgaacttgacccggtggagaat
aaggatttgcctccacatgcgtgccgttattgcggtatacacgaaccaagcaccgtggtt
atgtgtaacatttgcaaaaaatggttttgtaacgggcgcggaagtacgtccgggtcgcac
atcgtgaaccatctcgtccgtgccaagcatcgggaggttacgcttcacgcagatggtccc
ctcggggaaacggttctggagtgctattcttgcgccgttcggaacgtgtttgttctcgga
ttcattcctgctaaaagcgactccgtcgtggtgctgttgtgcagacaaccgtgtgccgca
cagaactccatcaaggacatgaactgggaccaggagcaatggaagccgttgattgccgat
cgttgcttcttgttttggttggtgaagattccaacggagcaggatcagttgcgtgcgcgt
aaagtatccgccgctcaaatcaacaagctggaagagctgtggaaggaaaacgtcgacgca
acgtttcaggatttggagaagccaggcatcgacaaggaaccgcaacaggtacagcttcgg
tacgttgacgggtatcagtaccagaacacgttcgggccactggtaaatctggaagcggat
tatgatgaaaagctgaaggaaagccaaacacaggaaaatattgaaatccgatgggacact
gggctgaacaagaaaacgatcgcttacttcacgctcgccaagaacgacggagatatgaag
ctgatgcatggcgatgagctgaagctgcggtacgtcggcgagctgcacaagccgtggagc
tgcatcggccatgtaatcaaggtgccggacaactacggtgacgatgtgggcctggagctg
aaacacaatcatcatgcaccagtcgagcgcacgagcaacttctcggtcgactttatctgg
aagggcacttcgttcgagcggatgcagcaagccctgcgcaagtttgcgatggacgccaaa
agcgtttcgaactatatatacacacgcctgcttggaaacgtgcgtgccgatggtgccgaa
gaggtgctgttccgattgaatctgcccaaacatttcagcgccccgaacctgcctgatctg
aatcggtcgcaggtgtacgcagtccggcacgcactccagcgcccgctgagccttatccaa
gggccaccggggactggcaagacagtcacctcggcaacgatcgtgtaccagctggcgcgg
ctgaacagtggaccgattttggtgtgcgccccgagcaacactgctgtcgatcagctgacg
gaaaagattcaccgcaccaacctgaaggtggtacgcgtgtgcgcacgatcacgtgaagcg
atcgactcgcccgttagctttctagcgctgcacaatcaaattcgcaacatggcgcagaat
tcggaattgaagaaattgcaacagctgaaggatgaaactggtgagctgagtctgtcggac
gagagacgctatcgatcgttgaaaaagcaggcggaacgggagctgctggaagcggccgac
gttatttgctgtacctgtgtaggtgcgggtgatcttcgtttgcagcgtattaaatttaac
tccatactgattgacgaatcgatgcaatcgaccgaaccggagtgcatggtcccggtggtt
ctgggtgccaagcagcttatcctcgtgggcgatcactgtcagctgggaccggtggtgatg
tgtaaaaaggcggccaaggcaggattgtcgcagagtttgtttgaacgcttggtggctcta
gggattcgtccttttaggcttgaggtgcagtatcgcatgcacccggagttgtcccagttt
ccgtcgaacttcttctacgagggtagccttcaaaatggtgtgtgtgccgacgaacgcaag
ctgaaagtagactttccctggccgtcgccggactgtccaatgtttttcctcgtcactcag
gggcaggaagaaatcgccggctctggcacgtcatacctaaaccgcacggaggcgtcgaat
gtggagaagataacgacccggttcctgaaggctggtattaagcccgaacagattggaatc
attaccccgtacgagggccagcgcgcctacctggtccagtacatgcagtaccagggttcg
ctccactcgaagctgtaccaggaaatcgaaatagccagcgtggatgcgttccaggggcgg
gagaaagacatcatcatcatgtcatgtgtacgagcaaatgaacaccagggcataggtttt
ctaaacgatccgcgccgattgaacgtagcactgacacgtgccaagtacggcatcatcatt
gtcggcaatccgaaggtgctgtcgaagcaagagctgtggaaccatttgctgaacttttac
aaagacaaaaaggtgctggtggaaggatcgttgaacaatctcaaagagtcgatgatacag
ttcaccaagccgaaaaagattatcaatacgctaaaccccggaatgcactttatgaccaac
gctatgtatgacgccaaggaggtgctcgggggcggatatttcgatcgtnnaaccctggac
cttcaaccagcttacgcgcacaacccgcttgccgggtacggcagcgcaaacaactatcac
cagcagggcggatttatggatgtaacgggccatggcagcactgccagtgcaaatacgccg
cttgacgcgtttatgcgcaaagtgcacgatccgattgggtatatttcgccacagcgttcg
cttcctgcagttagcaacatgcccgtaccggtgggaatgttcatcaacatgtcaagcgca
ccctcacgcttctatcaacaacagcaacaagcagctatgcaggcggctaagcaaacgcgt
cgcccagtggtaggcaaaacgtccagtcaactgttggcagctggttccggatcagtctct
gccggtggaaagtcgggccgtccccgtccaattggcccaccaagcagcagcagcagcggc
ggcggtatcaaccatggcagtaatattgcaggctcatccctaacccaaggcatgtcgcag
aacatgtcccagccgggcttcagcttgtcgcagcaggcagaattctcgcaggactatatg
ggcgactatcagtcgcagatggacaacatactgtcgcaagaatcgaactatcacagccag
tccgggccaggcgatcggctggcgttcgaactgcattcgagttcgcaattctcgcaaccg
tactga
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integrated database retrieval system
