Asticcacaulis sp. ZE23SCel15: Q1W73_12260
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Entry
Q1W73_12260 CDS
T09907
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asti
Asticcacaulis sp. ZE23SCel15
Pathway
asti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q1W73_12260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asti03021
]
Q1W73_12260 (rpoC)
03400 DNA repair and recombination proteins [BR:
asti03400
]
Q1W73_12260 (rpoC)
Enzymes [BR:
asti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q1W73_12260 (rpoC)
Transcription machinery [BR:
asti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q1W73_12260 (rpoC)
DNA repair and recombination proteins [BR:
asti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q1W73_12260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WKL56460
LinkDB
All DBs
Position
2707383..2711570
Genome browser
AA seq
1395 aa
AA seq
DB search
MNQEVLNIFNPVQVAPTFDQIRITLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELASPVAHIWFLKS
LPSRISMFLDMALKDVERVLYFENYIVTEPGLTALKLNQLLTEDEYYRCQEEFGDDSFTA
EIGAEAIRNMLMSMNLSEIADKLRSDLADNPSEMKAKKASKRLKLIEAFMELGNKPEWMI
LTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKEKEQGEGMIFADLNEIQAALD
AGVVSMHAKVKCRFTEVDPDGETRTRVIDTTPGRMKIAALLPRHASIGIRVLEKNLTKKE
IGNLIDVVYRHCGQKATVIFADQMMALGFKEAARAGISFGKDDIVIPDSKKGIVEETRNL
VEEYEQQYADGLITKGEKYNKVVDAWSKATDRVSDEMMKEISRKHLNADGTEKEINSIYM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLSVMEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIIMEPDCGTTKGITLRAVVEGGDVLVSLGARVLGRTT
AEDIKDVATQEVVVEADTYVDEEVVELIEASGVQSVKVRSVLTCEAELGACAACYGRDLA
RGTRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEQSFYETTADGVIKLTGGNT
VKGTHGDLIAMSRNVMITVHHDGKDRETYKVPYGARLRIVDGSEVKKGQRLAEWDPYTTP
IITEVGGKIRFEDLTDGMSVREETDEATGITNRVVADWRASPRGSDLRPGMGIVDDAGAY
KRLANGTELRYLLPVGAILSVGNGDEVRPGEILARIPTEGAKTRDITGGLPRVAELFEAR
RPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEDGSEAVEFLIPKGKHISVHDGDFIQKGD
YIIDGNPDPHDLLRIQGVESLAEYLVNEVQDVYRLQGVPINDKHIEVIVRQMLQKVEILE
PGDTGLIKGDHLDKTEVDLDNAKTEKRGGRLAVTQPILLGITKASLQTKSFISAASFQET
TRVLTEASVNGKVDTLDGLKENVIVGRLIPAGTGAYLRSLQRIALKRDEQLAQTREETME
PLPAEILLEAPAASE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctcaatattttcaatccggtccaggtcgccccgaccttcgaccag
atccgcatcactctggcatcgcctgaaaagatcctttcgtggtcgttcggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcctgagcgtgatggtctgttctgtgcg
cgtatctttggcccgaccaaggactatgagtgcttgtgcggtaagtataagcgcatgaag
tacaagggcattatctgcgaaaagtgcggcgtggaagtcactctgtcgcgtgttcgtcgt
gagcgcatgggccacatcgaactggcctcgccggtcgcccacatttggttcctgaagtca
ctgccgtcgcgtatttccatgttcctcgacatggcgcttaaggacgtagagcgggttctg
tactttgaaaactacatcgttacggaaccgggtctgaccgcgcttaagcttaaccagctt
ctgaccgaagacgaatattatcgctgtcaggaagaattcggcgacgacagcttcacggct
gaaatcggtgccgaagctatccgcaatatgctgatgtcgatgaacctcagcgagattgcc
gataagctgcgttcggatctggccgataatccttcggaaatgaaggccaagaaggcgtcc
aagcgccttaagctgatcgaagcgttcatggaattgggcaacaagcctgaatggatgatc
ctgacggttgtgccggtcattccgcctgagctgcgcccgctggtgccgctggatggtggc
cgtttcgcgacctccgacctgaacgacctctatcgccgcgtcatcaaccggaacaaccgt
ttgaagcgtctgatggaactgcgcgcaccggacatcatcatccgtaacgaaaagcgtatg
ttgcaggaatcggttgacgccctgttcgacaatggtcgtcgtggtcgtgtcatcaccggt
gccaacaagcgtcctctgaagtcgttggccgatatgctgaagggtaagcagggccgcttc
cgtcagaacctgctgggcaagcgcgtcgactattcgggtcgttcggttatcaccgtgggc
ccggaactgaagctgcacgagtgcggtctgcccaagaagatggcgctggaactgttcaag
ccgttcatctatgcccgtctggatgccaagggcctgtccggcaccgttaagcaatccaag
cgcatggtcgagcgtgagcagccgcaggtttgggatatcctcgaagaggttatccgcgaa
catccggtcatgttgaaccgcgccccgacgcttcaccgtcttgggattcaggcgtttgag
cccaagctgatcgaaggtaaggcgatccgtctgcatccgctcgtctgttcggcctttaat
gccgacttcgacggtgaccagatggctgtccacgtcccgctgtcgctggaagctcagctc
gaagcccgcgtcctgatgatgtcgaccaacaacatcctgtcgccggccaacggtaagccg
atcatcgtgccgtcgcaggatatcgtgctgggtctctattatctttcgctcgtgaaagaa
aaagagcagggcgaaggcatgatctttgccgacctgaacgaaattcaggccgccctcgat
gccggtgttgtctccatgcacgccaaggtcaagtgccgcttcaccgaagtcgatcctgac
ggcgaaacccgcacccgtgtcatcgacacgacgccgggccgcatgaagatcgccgctctg
ctgccgcgtcacgcctcgatcggtatccgggttctggaaaagaaccttacgaaaaaggaa
atcggcaacctgatcgacgtggtttatcgccactgcggtcagaaggcgaccgtgattttc
gctgaccagatgatggcgctgggcttcaaagaggcggcgcgcgccggtatctcgttcggt
aaggacgacatcgttattccggattccaagaagggtatcgtcgaagaaacccgtaacctg
gttgaggaatacgagcagcaatatgctgatggtctgatcaccaagggcgaaaagtacaat
aaggtcgttgacgcctggtcgaaagctaccgaccgcgtgtctgacgaaatgatgaaggaa
atcagccgtaagcacctcaatgctgatggtactgaaaaagagatcaactcgatctacatg
atggccaactccggtgcccgtggttcgcaggcccaaatgaagcagcttggtggtatgcgc
ggccttatggccaagccgtcgggcgaaatcattgaaacgccgatcatttcgaactttaaa
gaaggcctgtcggttatggagtacttcaactccacccacggcgcccgtaaaggtctggcc
gataccgcgctgaagacggccaactccggttatctgacccgccgtctggttgacgtcgct
caggactgtatcatcatggagccggattgcggcacgacgaagggcattacgctccgcgcc
gtggtcgaaggcggtgacgtgctggtatcgctgggcgcacgcgttctgggccgcaccacg
gctgaggatatcaaggacgtggcgactcaggaagtcgtggtcgaagcggatacctatgtc
gacgaagaagtggtcgagctgatcgaagcttcgggcgttcagtcggttaaggtgcgttcg
gtcctgacttgtgaggcggaactcggtgcctgtgcggcctgctacggtcgcgatctggcc
cgcggtacccgcgtcaatatgggcgaagcggtcggcgtcattgcggcgcagtcgatcggc
gaacccggcacgcagcttaccatgcggaccttccacatcggcggtaccgctcaggtggcc
gagcagtcgttctatgaaacgacggcggacggcgtgatcaagctgaccggcggcaacacg
gttaagggcacccacggtgacctgatcgccatgagccgtaacgtcatgatcacggttcac
catgatggtaaggatcgtgaaacctataaggtgccttacggtgcgcgcctgcgtatcgtg
gacggctccgaggtcaaaaaaggccagcgtctggcggagtgggacccctataccaccccg
atcatcaccgaagtcggcggtaaaatccggtttgaagacctcactgacggcatgtcggtg
cgtgaagaaaccgacgaagctaccggcatcaccaaccgcgtggtcgctgactggcgtgcc
tcgccgcgtgggtctgacctgcgtccgggcatgggcattgtcgatgatgccggcgcctat
aagcgtctggccaacggcactgagttgcgttacctcctgccggtcggggctattctctcg
gtcggtaacggtgacgaggttcgtccgggtgaaatcctggcacgtatcccgaccgaaggt
gccaagacccgcgacatcaccggtggtctgccgcgcgtcgccgaactgttcgaagctcgc
cgtccgaaagactgtgctgtcatcgccgaaatggatggccgcgtagaatttggtcgcgac
tataagaacaagcgccgcatcaagatcacgccggaagatggttcagaagccgtcgagttc
ctgatcccgaaaggcaagcatatctcggttcacgatggtgacttcatccagaagggtgac
tacatcatcgacggcaaccccgatccgcatgatttgctgcgtattcagggcgttgaatcc
ctggctgagtatctggtcaacgaagttcaggacgtttaccgtctgcaaggcgtgccgatc
aacgacaagcacatcgaagtcatcgtgcgtcagatgctgcaaaaggtggaaatccttgag
ccgggcgataccggcctcatcaagggcgatcacctggataagaccgaggttgatcttgat
aatgccaagacggaaaagcgcggtggccgtttggcggtcactcaaccgatcctgctcggt
atcaccaaggcgtctctgcaaacgaagtcgttcatctcggccgcttcgttccaggaaacg
acccgcgtcctgaccgaagcttcggtcaacggcaaggtcgatactctggacggcttgaaa
gaaaacgtcatcgtcggtcgtctgatcccggccggtacgggcgcttacctgcgctcgctc
cagcgcatcgcgcttaagcgtgatgagcaactggcccagacccgtgaagagacgatggag
ccgctgccggcggaaattttgctcgaagcgcctgcggcttccgaataa
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