Asticcacaulis sp. ZE23SCel15: Q1W73_12300
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Entry
Q1W73_12300 CDS
T09907
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
asti
Asticcacaulis sp. ZE23SCel15
Brite
KEGG Orthology (KO) [BR:
asti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asti03019
]
Q1W73_12300 (hrpB)
Enzymes [BR:
asti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q1W73_12300 (hrpB)
Messenger RNA biogenesis [BR:
asti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q1W73_12300 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
CON_HrpB
AAA_30
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WKL56467
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All DBs
Position
2716808..2719276
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AA seq
822 aa
AA seq
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MLPVEEIYSPLKAYLQTRTTALIIAPPGAGKTTGIPLALLDEAWLKGQTLILLEPRRLAA
RAAAARMAETLGESVGETVGFRVRGESRIGPKTRIEVVTEGIFSRRIVDDPALDGVGGVI
FDEFHERSLDADLGLAFARDSQTLLRDDLRLLVMSATLDGQRVSEVLSDAQTFHSEGRAY
PVTTHYLGRDQGQRLEDDIARHILRLQSKLTPEQAETLLVFLPGQGEIHRLASRLEEGGL
HSHIELCKLYGAMDIRDQSAVLRKNTPGRPKIVLATAIAETSLTLDRVTMVIDSGVSRLG
RYDPARGTMRFVTERVTKASADQRRGRAGRTQAGDCYRLWDKEQDLSLIPFARPEILETD
LSRLVLDLRMWGARSTVGLSLLDHPPEGAMNEATRLLQALGALDDKGDLTTHGRLMSQLP
MSPRLANMLLHAAKEGHASRGAALAALLSENGLGGKSTDLETRLEGLSRDKTPKAVQARS
LAQNWTRLADSLIKKEIKQTDARKNSAYLLAEAFPERIAKARGKAGEFVLANGRGAYVDD
TDLLARSSYLAVGDLGGGSARDRILLGASLTADEIMRLFADRLETAAVIEKSAGGNFRAF
EQVRLGQVVLSSKPMERVPTELLVKVQAEEIKSKGLKALKFSDHAESLRQRVQFLRNDDP
AWPDMSEAALLQTLEDWLGPYAGGRPLLNLTAHDVTQALTNLLSYEQQRNLDALAPESLR
LPTGNGARIDYGAEGGPRVEARVTEFYGTARHPTVGVNKTPLTLSLLSPAHRPIQITKDI
VGFWDGSWPEVRTEMKGRYPRHVWPEDPKSAQATARAKPRGT
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctgtcgaagagatatattcgccgcttaaggcgtatctgcaaacccggaccacg
gccctgattatcgcgccaccgggagcgggtaagacgacggggatacctctggccttgctg
gatgaagcgtggcttaagggccaaaccctgattctgctggagccgcggcgactggcggcg
cgggcagcggcggcgcgaatggcggagaccttgggcgaatctgttggtgaaacggtgggc
tttcgggtgcgcggtgaaagccggattggccctaagacccgcattgaagtcgtgaccgaa
ggcatattttcgcgccgcatcgtcgatgacccggcgcttgacggtgtgggcggcgtcatc
ttcgatgagtttcatgagcgcagtcttgatgccgatctggggctggcctttgcgcgcgat
agccaaaccctgttgcgggatgatctaaggcttttggtcatgtcggcaacactggatgga
cagcgggtatctgaggtgctgtctgatgctcaaacctttcattccgaagggcgcgcctat
ccggtcacgacccattatctgggccgggatcaggggcagaggctggaagatgatatcgcc
cgccatatcttaaggttacaatctaagcttacgcctgaacaggctgaaaccttgttagtt
tttctgccgggtcagggtgagattcaccgcttggccagccggttagaagagggcgggctg
catagtcatatcgagctttgcaaactttacggcgcaatggatatccgcgatcagtctgcc
gttttgcgcaaaaacacaccggggcgacccaagattgttttggcgacggccattgctgaa
acctcgttgacgctggaccgggtgactatggtgatcgacagcggtgtatcgcggctgggg
cgttatgatccggcgcgtgggacgatgcggtttgtcactgaacgcgtcactaaggcgtct
gctgatcaacgccgtggccgcgcaggtcggacgcaggccggggactgttaccggctgtgg
gataaagagcaggatctgtcgcttattccctttgcgcgaccggaaattttggaaaccgat
ctgtcacggctggtactggatctgcgcatgtggggcgcgcgctcgaccgtgggtttgagc
ctgctcgatcatccccctgaaggcgctatgaatgaggcgacacggttgctgcaggccctg
ggcgcgctggatgacaagggcgatctgacgacacacgggcgtttgatgtcgcagctaccg
atgtcgccacgtctggccaatatgctgctgcatgcggctaaggaagggcatgcgagcaga
ggtgcggccctggccgctctgctgtcggagaatggcttaggcgggaaatcgaccgatctg
gaaacccggctagagggcttaagccgtgacaagacgcccaaagcggttcaggcgcgtagt
ctggcgcaaaactggacgcgtctggcagatagtttgattaaaaaagaaattaaacaaacg
gatgcgcgtaaaaattcagcctatctgttagctgaagcctttccggaacgcatcgccaag
gcgcggggtaaggcgggcgaattcgtcttggccaatggccgtggtgcctatgtcgatgac
accgacctcttagccagatcgtcttatctcgccgtcggtgatctgggcgggggcagtgcg
cgtgatcggatattgctgggggcgtcactgaccgccgatgagattatgcgtctgttcgca
gaccggctggaaactgccgcggttattgagaaaagcgctggcggtaatttccgggctttt
gagcaggtgcggttggggcaggtcgtgctgtcctccaaacctatggaacgcgtccccaca
gaattattagtgaaagttcaagctgaggagataaaatctaaaggactgaaagcgctgaaa
ttttctgaccatgcggagagtttgcgtcagcgcgtgcaatttttgcgaaacgatgatcct
gcgtggccggatatgtcggaagctgccttgcttcaaactctggaagactggcttgggccc
tatgccggcgggcgaccgctgcttaatcttaccgcgcatgacgtcacccaagctctaacc
aatttgctcagttacgaacagcagcgaaacctcgatgcgctggcgccggaaagtctgcgc
ctgccgacaggcaacggggcgcgcatcgattatggtgccgaaggcggcccgcgggttgaa
gcgcgggtgacggagttttatggcactgcccgtcatccgacggttggcgtcaacaaaacg
cccctgaccctttccctgttgtcgccagcccatcgccccatccagattaccaaggatatc
gttggtttctgggacggctcctggccggaggtgcgcactgaaatgaaaggacgctacccc
cgtcacgtctggcccgaagacccaaaatcggcacaggcgaccgcacgggctaaaccgcgt
ggtacttaa
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