Asticcacaulis sp. MM231: MMA231_00179
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Entry
MMA231_00179 CDS
T10530
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
astm Asticcacaulis sp. MM231
Pathway
astm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
astm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMA231_00179 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
astm03021
]
MMA231_00179 (rho)
03019 Messenger RNA biogenesis [BR:
astm03019
]
MMA231_00179 (rho)
Transcription machinery [BR:
astm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MMA231_00179 (rho)
Messenger RNA biogenesis [BR:
astm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MMA231_00179 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
OB_RNB
AAA_25
TcdB_toxin_midN
AAA
S1CSD-TOTE-2
AAA_14
Motif
Other DBs
NCBI-ProteinID:
CAL4865942
LinkDB
All DBs
Position
MM231:180435..181913
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AA seq
492 aa
AA seq
DB search
MRSQIAQGLKPQAMSRAHLTIREITMTDETESTPVEAAETELETQSENNNQTDEDMEGEE
GDEEVVEGSMTGQKMSLQTLKDKTPTDLLTFAESLGVENASNMRKQDMMFAILKALAEEG
VEISGSGVMEVLQDGFGFLRSPEANYLPGPDDIYVSPQQIRRYGLRTGDTVEGPIRSPRE
GERYFALLKTQAINFEDPENIRHKVHFDNLTPLYPDERLWMEIEDPTLKDRSGRIIDIVA
PLGKGQRCLIVAPPRVGKTVMLQNIAKSVAANHPDCYLIVLLIDERPEEVTDMQRTVRGE
VISSTFDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLT
GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLD
RKVADKRVFPAMDVLKSGTRKEELLTDKSNLQKTYVLRRILNPMGAQDAIEFLSDKLRQT
KNNAEFFQSMNT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcgcaaattgctcaggggctcaaaccccaggcaatgtcgcgtgcgcatctcacc
atacgagagatcaccatgactgacgaaaccgaatccacacccgtcgaagccgctgagacc
gaactggaaacccagtccgaaaataacaatcagactgacgaggatatggaaggcgaagag
ggcgatgaggaggttgtcgagggttcgatgaccggccagaagatgtcgctgcaaaccctt
aaagacaaaacccctaccgatctgctgacctttgcggaatcgctcggcgtcgaaaacgcc
agcaatatgcgcaagcaggatatgatgtttgccatcctgaaagcgctggccgaagaaggc
gtcgagatcagcggttccggcgttatggaagttctgcaggacggtttcggcttcctgcgt
tcgcccgaagctaactatttgccgggcccggacgacatctatgtcagcccgcaacagatc
cgccgctatggtctgcgcaccggtgacacggtcgaagggccgatccgttcgccgcgcgaa
ggtgagcgctatttcgccctgttgaagacccaggccatcaatttcgaagacccggaaaac
atccgccacaaggttcacttcgacaacctgacgccgctctatcccgatgagcgcctgtgg
atggagattgaagacccgacgctcaaggaccgctccggccgcatcatcgacatcgtggca
ccgcttggcaagggccagcgctgcctgatcgtcgccccgccgcgcgtcggtaagacggtc
atgttgcagaacatcgccaagtcggtggcggctaaccacccggattgctacctgatcgtt
ctgctgatcgacgaacgtccggaagaagtgaccgatatgcagcgcaccgtgcgcggtgaa
gtcatctcctcgacgtttgacgagccggctacgcgccacgtccaggtcgcagaaatggtc
atcgaaaaagccaagcgcctcgtcgaacacaagcgcgatgtcgtgatcctgcttgactcg
atcacccgtcttggccgcgcctacaacaccgtcgtgccatcatccggcaaggtgctgacc
ggcggtgtcgacgccaacgcgctgcaacgtccgaagcgcttcttcggtgcagcccgtaac
atcgaagaaggcggctcgctgaccatcatcgccaccgccctgatcgataccggctcgcgc
atggacgaagtcattttcgaagagttcaagggcacgggcaactcggaaatcgtgctcgat
cgtaaggtcgccgacaagcgcgtcttcccggccatggatgtgctcaagtccggcacccgc
aaggaagaactgctcaccgacaagtcgaacctgcaaaagacctatgtcctgcgccgtatc
ctcaacccgatgggcgcccaggatgccatcgagttcctgtcggacaagctacgtcagacc
aagaacaatgccgagttcttccagtcgatgaacacataa
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