Asticcacaulis sp. MM231: MMA231_01812
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Entry
MMA231_01812 CDS
T10530
Symbol
rne_2
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
astm Asticcacaulis sp. MM231
Pathway
astm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
astm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMA231_01812 (rne_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
astm03019
]
MMA231_01812 (rne_2)
03009 Ribosome biogenesis [BR:
astm03009
]
MMA231_01812 (rne_2)
Enzymes [BR:
astm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MMA231_01812 (rne_2)
Messenger RNA biogenesis [BR:
astm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMA231_01812 (rne_2)
Ribosome biogenesis [BR:
astm03009
]
Prokaryotic type
rRNA processing factors
MMA231_01812 (rne_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAL4867555
UniProt:
A0AAT9IW21
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All DBs
Position
MM231:complement(1812503..1815247)
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AA seq
914 aa
AA seq
DB search
MSKTMLIDSTHTEETRVVVMNGSRVEEFDFESHARKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREKLIAELQQAAHANNHGDDEGDDEDHDDDSDDLP
DEERRLRQHLIRRYKIQEVIKRRQILLVQVVKEERGNKGAALTTYMSLAGRYCVLMPNTA
RGGGISRKITNSADRKRLKTLVQSLDVPHGMGLIVRTAGAKRTKLEIKRDYDYLLRVWET
IRETTLKSNAPALIYEEEDLVKRAIRDLFDKDFDGVLVEGEDGYRSAKDFMRMIMPSQAK
KIQLYKANTPLFARYGVEDLISKIYSPVVPLKSGGYLVINQTEALVAIDVNSGKSTKERN
IEATALKTNMEAAEELARQMRLRDLAGLVVIDFIDMDESKNNRSVEKKLKDALAEDRARI
QMGKISGFGLMEISRQRRRTGFLEGTTIVCPHCEGQGRIRSVDSAALSAMRKIDMEAMQN
GAGAITVKLPMDVALYILNEKQVHLAKLRLEWGLKVNVEIDTDLGHTDAQIVRTVHADEV
DFVAPVRPEPIAFDTTPDVAEDEEIDDEIIESDEDEEDDGEKRPERAERAERPEREDREG
GRNGKRRRRRRGGRDRDSEERPAVTANPEASESDDDGEDDDSIGEDGFRKGRRRRGRRGG
RRAGFDSRPRETYSWVRARTPSLEAPYVWIDPFEEQQRREQSESSERQQRNPAPINAESA
LGAESTQPTSLVPEALRDQPAPKRQRPPRRSRRGGSVVETPVDEAAAENNTAPMPLTKDV
DIDPEAAFAASEPPHLPVEEIAPPARKTRSRKKVVEAGAEAPAAVEAPVAEVPVAEVVAE
PVKAPARASRSRAKKVVEFVAVAEPVVVTETIVAAAPAPLVAEPAAVASVIAAEPDPNEI
SAPPEKPKRGWWRR
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaacaatgttaatcgactcgacgcacacggaagagacccgtgtcgtcgtgatg
aacggctcacgggttgaagagttcgatttcgaaagccacgccagaaaacaactccgcggc
aatatctatctcgccaaggtcacacgcgtagaacccagtctgcaggcagcgttcgtcgaa
tacggcggcaaccgtcatggctttctggccttcaacgaaatacatcctgactactatcag
atcccggtcgctgaccgagagaaactgattgccgagctgcagcaggccgctcacgccaac
aatcatggtgatgatgaaggcgacgacgaagatcacgatgacgacagcgacgatctgccc
gatgaagagcgccgcctgcgccagcacctgatccgccgttacaagatccaggaagtcatc
aagcgtcgccagatcctgcttgttcaggtcgtcaaggaagagcgtggcaacaagggcgct
gccctcaccacctatatgtcgctggccggtcgctattgcgtgctgatgccgaacacggcg
cgtggtggcggcatttcacgcaagattaccaacagcgccgatcgcaagcgtctcaagact
ttggtgcagagcctcgatgtgccgcacggtatgggcctgattgtccgcacggccggcgcc
aagcgcaccaagctggaaatcaagcgcgactatgactacctgctgcgcgtctgggaaacc
atccgcgaaacgacgctgaaatccaacgcgcccgccctgatctatgaagaagaagatctc
gtcaagcgcgccatccgcgacctgtttgacaaggattttgacggcgtgctggtcgagggc
gaagacggttaccgttccgccaaggacttcatgcggatgatcatgccgtcacaggccaag
aagatccagctctacaaggccaacacgccgctgtttgcgcgctatggcgtcgaagacctg
atctcaaaaatttattcgccggtcgtgccgttgaaatcaggtggctatctggtcatcaac
cagaccgaagccctcgtcgccatcgacgtcaactcaggcaagtcgaccaaggaacgcaat
atcgaggccacggccttgaagaccaatatggaagcggccgaagaattggcgcgccagatg
cgcctgcgcgatctcgccggcctggtcgtcatcgacttcatcgacatggatgaatcgaag
aacaaccgctcggtcgaaaagaagctgaaggacgccctagctgaagaccgggcccggatc
cagatgggaaagatttccggcttcggtctgatggaaatcagccgccagcgccgccgcacc
ggtttcctggaaggcaccaccattgtctgcccgcactgtgaaggtcaaggccgtatccgc
tccgtcgattccgccgccctttcggcgatgcgcaagatcgacatggaggccatgcaaaat
ggtgccggcgccatcacggtcaagctgccgatggatgtggcactctacatcctcaacgaa
aagcaggttcacctcgccaagctgcgcctcgaatggggtctgaaggtcaatgtcgaaatc
gacaccgatcttggccacaccgacgcgcagatcgtccgcacggtccacgccgatgaggtc
gatttcgttgcgccagtccgccccgagcccatcgccttcgacaccacgcctgacgtggct
gaagacgaggagatcgatgacgagatcatcgagtccgacgaagatgaggaagacgacggc
gaaaagcgcccggaacgtgctgagcgcgccgagcgtccggaacgcgaagatcgcgagggc
ggtcgtaacggcaagcgtcgtcgtcgtcgccgtggcggccgtgatcgtgacagtgaggaa
cgtcctgctgtcaccgccaatccggaagcttccgaaagcgatgacgacggtgaagatgat
gacagcatcggcgaagatggcttccgcaagggccgccgccgtcgtggccgtcggggtggc
cgccgtgccggcttcgacagccgtccgcgcgaaacctatagctgggtgcgtgctcgcacg
ccttcgcttgaggcgccgtatgtctggatcgatccgtttgaagagcaacaaaggcgcgaa
caatcggagtcgtccgagcgtcagcaacgcaaccctgcgccgataaatgcggaatcagcc
ctcggtgctgaaagcacgcaaccgacctcgctcgtgccggaagcgctgcgcgatcagcca
gcgcccaagcgccagcgtccgccacgtcgtagccgcagaggcgggtctgttgttgaaacg
ccggtcgatgaggccgccgcggaaaacaacaccgcgcctatgcccttgaccaaggatgtc
gatatcgaccccgaggccgcgttcgccgcctccgagccaccgcatctgcccgtcgaggag
atcgctccgccggcccgtaaaacgcgctcacgcaaaaaggtcgtcgaggcgggagccgaa
gccccggccgctgtcgaggccccagtcgcagaagtgccagttgccgaagtagtcgccgag
ccggtcaaggcgccagcccgcgccagccgcagccgcgccaagaaggttgtcgagtttgtt
gcagtggcagaacctgtcgtcgttacagagacgatcgtcgcggctgcgcccgcgcctctc
gtcgccgaaccggcagcagtcgcgtcggtaatagcggccgagccagatccgaacgagatt
tcggctccgcctgaaaagccaaagcgtggctggtggcgccgctaa
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