Asticcacaulis sp. MM231: MMA231_02085
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Entry
MMA231_02085 CDS
T10530
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
astm Asticcacaulis sp. MM231
Pathway
astm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
astm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMA231_02085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
astm03021
]
MMA231_02085 (rpoC)
03400 DNA repair and recombination proteins [BR:
astm03400
]
MMA231_02085 (rpoC)
Enzymes [BR:
astm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMA231_02085 (rpoC)
Transcription machinery [BR:
astm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMA231_02085 (rpoC)
DNA repair and recombination proteins [BR:
astm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMA231_02085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CAL4867818
LinkDB
All DBs
Position
MM231:complement(2076937..2081121)
Genome browser
AA seq
1394 aa
AA seq
DB search
MNQEVLNIFNPVQVAPTFDQIRITLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELASPVAHIWFLKS
LPSRISMILDMALKDVERVLYFENYIVTEPGLTSLKLHQLLNEDEYYRCQEEFGDDSFTA
EIGAEAVRNMLMAMDLAAIADKLRADLIDNTSEMKAKKYTKRLKLIESFMESGNRPEWMI
LTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGIPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSLVKDGEQGEGMVFVDLNEIQQALD
NGSVSMHAKIKCRFTQMDADGVVRTKVVDTTAGRMKIAALLPRNENIGLKVLEKTLTKKE
IGNLIDVVYRHCGQKATVIFADQMMALGFKEAARAGISFGKDDIVIPETKVGIITETRTL
VEEYEQQYADGLITKGEKYNKVIDAWSKATDRVSDEMMKEISRKHMTADGREAEINSIYM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIIMETDCGTTRGITLRAVVEGGDVLVSLGQRVLGRTT
AEDIRDVATKEVVVEADTYIDENVVDLIDNSGVQSVKVRSVLTCEAEQGTCAACYGRDLA
RGTKVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEASFYETTSDGVVKLSAAPT
VKGTHGDLISMSRNLIITIFHDGKDRETYKVPYGSRLRVVEGTTVKKGQRLVEWDPYTTP
IITEVGGKVRFEDLTDGQTVREETDEATGISNRVVIDFRSTSKVEIRPAMGITDDAGAYK
KQSSGSDARYQLPVGAILSVGNGDEVKPGDIVARIPTEGAKTRDITGGLPRVAELFEARR
PKDCAVIAEMDGRVEFGRDYKNKRRIKITPDGEGEAVEFLIPKGKHISVHDGDYIQKGDY
IIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVEILEA
GDTGLIKGDHLDKAEVDIENAKAEKRGGRAALTQPILLGITKASLQTKSFISAASFQETT
RVLTEASVQGKIDTLDGLKENVIVGRLIPAGTGAYLRQLQRVAMKRDEQLSHQREEAMEP
LPAEVLLEAPAASE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaatatctttaatccggtccaggtcgccccgaccttcgaccag
atccgcatcaccctggcctcgccggaaaagatcctgtcgtggtccttcggcgagatcaag
aagccggaaaccatcaactatcgtacgttcaagcctgagcgcgacggcctgttctgcgcc
cgtatctttggcccgaccaaggattacgaatgcctgtgcggcaagtacaagcgtatgaag
tacaagggcattatctgcgaaaagtgcggcgtcgaagtcaccctgagccgcgttcgccgc
gagcgtatggggcacatcgaactcgcgtctccggtcgcccacatctggttcctgaagtcg
ttgccgtcgcgtatctcgatgatcctcgacatggcgctgaaggacgtggaacgcgttctg
tactttgaaaactacatcgtcaccgagcccggcctgacatcgctcaagctgcaccagctt
ctgaacgaagacgagtattaccgttgccaggaagaattcggcgatgacagcttcaccgct
gaaatcggcgccgaagccgtgcgcaacatgctcatggccatggatctcgccgcgatcgcc
gacaagcttcgcgccgatctgatcgataacacctcggaaatgaaggccaagaagtatacg
aagcgcctcaagctcatcgaatccttcatggaatcgggcaaccgccccgagtggatgatc
ctgacggtcgtcccggtcatcccgcccgaactgcgcccgctggtgccgctcgatggtggc
cgtttcgccacgtccgacctcaacgacctctatcgccgcgtcatcaaccggaacaaccgt
ttgaagcgcctgatggaactgcgcgcgccagacatcatcatccgcaacgaaaagcgcatg
ttgcaggaatcggtcgacgccctgttcgacaacggccgtcgtggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggtaagcaaggccgcttc
cgtcagaacctgctcggcaagcgcgtggattattcgggtcgttcggttatcaccgtcggt
ccggaactgaagctgcacgagtgcggtatcccgaagaagatggcgctcgaactcttcaag
cccttcatctacgcccgcctcgacgccaagggcctctccggcaccgtcaaacaatcgaag
cgcatggtcgagcgcgagcagccgcaagtgtgggatatcctcgaagaggtcatccgcgaa
cacccggtcatgctcaaccgcgcgcctacgctccaccgtctcggcatccaggccttcgag
cccaagctgatcgaaggtaaggccatccagcttcacccgctcgtctgttcggccttcaac
gccgacttcgacggcgaccagatggctgtccacgtcccgctctcgctggaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggtcgcccg
atcatcgtgccgtcgcaggatatcgtgctcggtctctattacctgtccctcgtgaaggac
ggtgaacagggcgaaggcatggtgtttgtggacctgaacgaaatccagcaggcgctggat
aacggctcggtgtcgatgcacgccaagatcaagtgccgcttcacccagatggacgctgac
ggcgtcgtgcgcaccaaggtggtcgataccaccgccggccgcatgaagatcgccgcgctt
ctgccgcgtaacgaaaacatcggcctcaaggtcctggaaaagaccctgaccaagaaggaa
atcggcaatctgatcgacgtggtttaccgccactgcggccagaaggcgacggtgatcttc
gccgaccagatgatggctctgggcttcaaggaagctgcccgcgccggtatctcgttcggt
aaggacgatatcgttattccggaaaccaaggtcggtatcatcaccgaaacccgcaccctg
gttgaagaatacgagcagcaatatgccgacggtctgatcaccaagggtgagaagtacaac
aaggtcatcgacgcctggtcgaaggctaccgaccgcgtgtcggacgagatgatgaaggaa
atcagccgcaagcacatgaccgctgacggccgtgaagctgaaatcaactcgatctacatg
atggccaactccggcgcccgtggttcgcaggcccagatgaagcaactcggtggtatgcgc
ggcctgatggccaagccgtccggcgaaatcatcgaaacgccgattatttcgaacttcaaa
gagggcctgtcggttctggaatacttcaactcgacccacggcgcccgtaagggcctcgcg
gataccgcgctgaagaccgctaactccggttacctgacccgccgtctcgtcgacgtggca
caagactgtatcatcatggaaaccgattgcggcactacccgtggcatcacgctgcgtgcg
gtcgtcgaaggcggtgacgtgctggtcagcctcggccagcgtgtcctcggccgtaccacg
gcggaagacatccgcgacgtggcgaccaaggaggtcgtcgttgaagccgatacctatatc
gatgaaaacgtcgtcgatctgatcgataactctggcgtccagtcggtcaaggtccgctcg
gtcctgacctgtgaagccgaacaaggcacctgtgccgcctgttacggccgcgatctggcc
cgtggcaccaaggtgaacatgggtgaagcggtcggcgttatcgctgcccagtcgatcggt
gaacccggcacccagctcaccatgcgtaccttccacatcggtggtacggctcaggtggcg
gaagcgtcgttctacgaaaccacctcggacggcgtggtcaagctgtcggcggcgcctacc
gttaagggcacgcacggcgacctgatctcgatgtcgcgtaaccttatcatcaccatcttc
cacgatggcaaggatcgtgaaacctataaggttccttatggttcgcgtctgcgcgttgtc
gaaggcaccacggtgaagaagggccaacgcctggtcgaatgggatccgtacaccaccccg
atcatcaccgaagtcggcggcaaggtccgcttcgaggatctgaccgacggccagaccgtc
cgcgaggaaaccgacgaagcaaccggcatctccaaccgcgtggttatcgacttccgctcg
acgagcaaggtcgaaatccgcccggccatgggtattaccgacgacgccggcgcctacaag
aagcaatcgagcggcagcgatgcccgctaccagcttccggtcggcgctattctctccgtc
ggtaacggcgacgaggtcaagccgggcgatatcgttgcccgtatcccgacagaaggcgct
aagacccgcgacatcaccggtggtctgccgcgcgtcgccgaactctttgaagcccgtcgt
ccgaaggattgcgccgtcatcgccgaaatggatggccgcgtcgaatttggccgcgactac
aagaacaagcgccgcatcaagatcacccccgatggtgaaggcgaagcggtcgagttcctg
atcccgaagggcaagcacatctcggtccacgacggtgattacatccagaagggtgactac
atcatcgacggcaaccctgatccgcacgatctgctgcgtattcagggcgttgaggctctg
gccgaatacctggtcaacgaagtgcaggaagtttatcgtctgcaaggcgtgccgatcaac
gacaagcacatcgaagtcatcgtgcgtcagatgctgcaaaaggtcgaaatcctggaagcc
ggcgataccggtctgatcaagggcgaccatctcgacaaggcggaagtagatatcgagaac
gccaaggctgaaaagcgcggcggtcgtgcggccctcacgcagccgatcctgcttggtatc
accaaggcaagcttgcaaaccaagtcgttcatctcggcggcttcgttccaggaaaccacg
cgtgtccttaccgaagcttcggtgcagggcaagatcgataccctggacggcctgaaggaa
aacgtcatcgtcggtcgcctgatcccggccggtacgggcgcctacctccgtcagctccag
cgcgtcgccatgaagcgcgacgagcagttgtcgcatcagcgcgaagaggccatggagcct
ctgcccgccgaagtgcttctggaagcgccggctgcttccgagtaa
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integrated database retrieval system
