Asticcacaulis sp. MM231: MMA231_02675
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Entry
MMA231_02675 CDS
T10530
Symbol
ligD
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
astm Asticcacaulis sp. MM231
Pathway
astm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
astm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MMA231_02675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
astm03400
]
MMA231_02675 (ligD)
Enzymes [BR:
astm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMA231_02675 (ligD)
DNA repair and recombination proteins [BR:
astm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MMA231_02675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CAL4868394
UniProt:
A0AAT9IZL5
LinkDB
All DBs
Position
MM231:complement(2681203..2683767)
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AA seq
854 aa
AA seq
DB search
MADNLDKYRQKRDFKLTAEPEGVLKKTTGNRYLIQKHDATRLHYDFRLELDGTLKSWAVT
RGPSLDPADKRLAVEVEDHPVSYGTFEGTIPKGEYGGGTVMLWDEGTWEFIGEPIGDPHE
ALKKGDLKFRLNGKRLQGEWVLVRMKPRPQDKGRNNWLLIKHHDEHMVEGDHDQFLSDNI
TSVVSDRTMEEIAAAGDKVWNSSPKRAGPAKEQLTFIAPELATLADAIPTGTNWLHEVKF
DGYRTLAMIEGEEVRMMTRTGLDWTHKFRHTADLLKSLGVTSAILDGEIVAINEAGRSSF
KGLQDALMEGHSADLQYYVFDLLHLDGEDLRKLPLTERKALLEDLLKGKDLSERIIYSDH
FLEADKGFLNKICDLEMEGIICKRADSTYVSGRGKSWLKVKCHKRQEFVIGGFSESTHAE
RGIGALLLGYYEEEKFVFAGKCGTGFDRKSSVAIWKKLDTLEQDTPAYDDKVPADARRGA
HWVKPEVVCEVEFTEWTTDGRLRHPSFQGLREDKPAGEIGRDRELHVTKTILLPEPPAMD
EDTKPTRKSAAKSKDEEVAGIHISHPERVIFPALGATKLQLAHYYDSVADLILPFVRERP
LSMLRCPEGIGDTCFFQRHIGHGEMKHIYDTGITVKGRNEDYMMIKDREGLISLVQWGVI
ELHPWGCKADKPDLPDKMIFDLDPDPETPWKQVIDGVHEVKARMDEFGLKSFLKTTGGKG
LHIVVPLTRKHNWNTVKAFTRAIAQSMAHDMPDKYIAVATKAARKGKIFVDYLRNDLTAT
AVAPFSVRAREGAGVATPLFWDELSVRLKPSDYTISTIAKRLAQLKSDPWADFETTKQTI
PDEILKALNIEADI
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatctggataagtatcgccagaagcgcgatttcaagctgaccgccgaaccg
gaaggcgttttgaaaaagacgacgggcaaccgctacctgatccagaagcacgacgccacg
cgactgcattatgatttccgcctcgaactcgacggcacgctgaaatcctgggcggtgacc
agggggccaagtctcgatccggctgataagcgtctggcggtcgaggttgaggaccatccg
gtttcgtatggcacctttgagggcacgatcccaaaaggcgagtatggtggcggcacggtc
atgctgtgggacgaaggcacatgggagtttattggggagcccatcggcgacccgcacgaa
gctctgaaaaaaggcgacctgaaatttcgcctcaacggcaagcggttgcagggcgagtgg
gtgctggtgcggatgaagccgcgacctcaggataagggccgcaacaactggctgctgatc
aagcatcatgatgagcatatggtcgaaggcgatcatgatcagtttttaagcgataacatc
accagtgtcgtttccgaccggaccatggaggagatcgcggcggccggcgacaaggtgtgg
aattcatcgccaaaaagagcagggcccgcaaaggagcagctgacatttatcgcgcccgaa
cttgcgaccctggcggatgcgattccgaccgggacaaactggctgcacgaggtcaagttt
gatggctaccgcaccctcgccatgatcgagggcgaagaggtccggatgatgacgcggacc
ggtctcgactggacgcacaagttccgccacacggccgatctgctgaaaagcctcggcgtt
acttcggccattctcgatggcgagatcgtggctattaatgaagccggacgctcgagtttt
aaggggttgcaggacgccttgatggagggtcatagcgctgacctgcagtattatgtcttc
gatctgctgcacctcgatggcgaggacctgcgcaaattgcccctgactgagcgcaaggcg
cttctggaagacttgctgaaaggcaaagacctcagcgagcgcatcatctacagcgatcat
tttctcgaagccgacaaggggttcttgaataagatctgcgatctggagatggaaggcatc
atctgcaagcgcgctgattccacctatgtcagtgggcgcggcaagtcgtggttaaaggtg
aagtgtcacaagcggcaggaatttgtcatcggtggtttctccgaatcaacccacgccgaa
cgtggtataggcgctttgttgctcggctattatgaagaagaaaagttcgtcttcgccggt
aagtgcggcaccggcttcgaccgcaaatcatcggtggcgatttggaaaaaactcgacacg
ctggagcaggacacaccggcctatgacgacaaggtgccggctgatgcgcggcgcggcgcc
cactgggtgaagcctgaggtcgtctgcgaggtcgagttcaccgaatggacgacggatggg
cgattgcgccacccgtcgtttcagggcttgcgcgaagacaagccggccggcgagattggc
cgcgaccgcgaactgcatgtgacgaagacgattttgctgccggagccgcccgccatggac
gaagacacaaagcctacccgaaaaagtgcagccaagagcaaggatgaggaggtcgcaggc
atccatatctcgcatccggagcgcgtgatctttcccgcgcttggagccaccaagctgcaa
ctggcgcactattatgacagcgttgccgacctgatcctgccctttgtcagggagcggccg
ctctccatgctgcgttgccccgaaggtatcggcgacacgtgtttcttccagcgtcacatc
ggccacggcgagatgaagcacatctacgacacgggtattacggtcaaaggccgcaacgaa
gactatatgatgatcaaggaccgcgaaggcctgatctccctggtgcagtggggcgtcatt
gagttgcatccctggggctgcaaggccgacaagccggacctgccggacaagatgatcttc
gacctcgatcccgatccggaaacaccctggaagcaggtgatcgacggcgtgcatgaggta
aaggcgcgcatggacgagtttggtctgaaaagctttctgaaaaccaccggtggcaagggg
ttgcatatcgttgtgccgttgacgcgcaagcataactggaacaccgtcaaggccttcacg
cgtgccatcgcccaatcgatggcgcatgacatgccggacaaatatatcgccgtggccacc
aaggccgcgcgcaagggcaagatcttcgtcgactatctgcgcaacgacctgacagcgacg
gcggtggcgcccttctcggtgcgagcgcgtgaaggcgctggggtggcgacaccgctattc
tgggacgaattgagcgtaaggctcaagccttcggattatacgatcagcacgattgccaaa
cgtctggcgcagttgaaaagcgatccgtgggctgatttcgagacgactaagcagacaatt
cctgatgagattttaaaggcgctgaacatcgaagcggatatttaa
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