Antennarius striatus (striated frogfish): 137590323
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Entry
137590323 CDS
T10427
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr04382
Cornified envelope formation
astr04510
Focal adhesion
astr04512
ECM-receptor interaction
astr04518
Integrin signaling
astr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137590323 (col4a6)
04518 Integrin signaling
137590323 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137590323 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137590323 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137590323 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
astr04147
]
137590323 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
astr00536
]
137590323 (col4a6)
Exosome [BR:
astr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137590323 (col4a6)
Glycosaminoglycan binding proteins [BR:
astr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137590323 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137590323
NCBI-ProteinID:
XP_068163968
LinkDB
All DBs
Position
23:3887000..3970682
Genome browser
AA seq
1713 aa
AA seq
DB search
MKLLICVIAVGLAVRSTHGGTDPNEPCAGQDCSRGCKCNPEKGSRGRPGPLGEVGRSGAE
GQRGGLGPAGPKGEKGHLGLKGPSGPKGDKGPMGVPGFQGNDGVPGHPGLDGSRGPPGLD
GCNGTRGDPGPSGYGTGVPGLRGPPGPPGLKGQKGDPRFIFEGGITSLPGLPGPDGYPGI
RGPDGPLGSVGPRGPEGYPGQPGPPGPPGPMGSRSDGYQGERGDKGDVGLPGPSGTPGDG
SLTSEQTLTIYKGDKGNPGPKGLRGFPGTAGRPGPFGYRGEYGEKGIPGYPGGRGAPGFN
GPPGAPGQQGYRGNPGFPGQPGYIGAKGDQGDPGPPGPPTYVSELGTTVQGPPGEPGYNG
LPGARGDQGPPGFPGPPGRPGIGGFGSGGPGSNGFPGTPGPKGEKGNAGIPGFGSEGFPG
SPGLPGAPGLPGPPGPSSFVQGPCVIHPEWVSIPQGSTTGGSSSIPGPPGATGPRGQPGN
TGYKGFRGDPGDCACAGGSRSGPGIPGLPGNNGNPGFPGRKGEAGDQGSPGFNGVPGSPG
RAGERGFVGRKGEKGASYYPSYGVGVKGELGAPGPRGPTGETGKPGRDGQPGFPGAPGQP
GDGGFFSYGEKGFPGFPGSKGRPGGPGEPGSGYIGTPGFRGEPGEPGIPGIPGAPGLPGP
RGENGCEGVNDDEEGTGQVLPCTIPGEVGNPGVPGIPGSPGPKGQPGFPGGSGRPGLDGS
PGQKGDPGFGGQPGPQGFPGPRGDPGIPGIPGQGYDGGRGKDGAPGRPGAKGQPGEVLGA
TPGPSGQNGLPGAPGDKGQPGTPGGPGLAGEDGRIGVPGLKGERGLDGLPGFPGSPGPPG
EPTGGIPGPRGAPGNRGSSGSPGFPGRKGDRGDPGFQGPAGMKGTPGLPGTPGTPGSRGP
PGPAGPGTREGIPGAPGRKGETGFPGLMGFPGLPGRPGSPGFPGGKGEAGGPGRNGLAGG
PGYPGQKGERGFPGLPGLPSPPLRSELVEKGEPGTPGFSGLPGFPGPRGDKGLPGLPGRQ
GVPGLPGFAELSKGLPGEPGFPGRPGGPGFPGPKGESGINGFPGSSGPRGDDGAPGLPGT
PGEFGRPGGKGLPGESYGYPGGPGAKGQPGEPGFPGGRSNNGPPGDNGFPGSPGFPGAKG
APGEAGRPGIMGSPGFPGPKGLSSVPGRRGQDGSPGLPGSPGGLGAKGLPGSPGLDGLNG
LGGAKGLPGTPGVNTGGRPGAPGIPGLKGDRGVSYPGAPGFPGPKGERGDSGGPGLPGFP
GRPGPPGETIGSDVPGALGDPGLPGLDGEYGFQGPPGPPGPPGPGTSQGDRGDAGLPGFP
GSPGRKGEAGGPGGPGAPGSSGFKGARGESGFSGGPGLKGFPGDPGYYGGKGPKGLRGPP
GRKGIPGITLPLPPRELQRSFGDVGIPGDNGGSGFPGEPGQPGMPGRPGPKGRPGPVGKL
GRTGSPGQAGLVGDTGPPGFPGPTGEQGLPGNVGRPGPPGAVGRSHGIGYTLVKHSQDFQ
VPMCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPKFSTIPFLYCSPNEVCYYASR
NDKSYWLSTTASIPMMPVSESQIQPYISRCSVCEAPSQAVAVHSQDVTIPTCPPGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVD
PNQQFLYSPAQETLKGGQERSKVSRCQVCSKIL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgctgatttgtgtgatcgcggtcggcttggcggtgagatctacgcacggaggc
accgatcctaacgaaccatgtgcaggacaggactgtagcagaggatgcaagtgcaacccg
gagaaaggcagcaggggccgtccggggccactcggtgaagtggggaggagtggagcagaa
gggcaacgagggggcctgggtcctgcgggcccaaaaggagagaaaggccaccttggactg
aaaggaccatctggccccaaaggagacaaggggcctatgggagtaccagggtttcaagga
aatgatggagtacctggtcaccctggactggatggcagcagaggaccaccaggactggac
ggttgtaacgggaccagaggagatcctggcccgtctggctacggcacaggtgtccccgga
ctccgtggtcctcctggaccccccgggctaaaagggcagaaaggagatccccgattcatc
tttgaaggtggcatcacgagcttaccaggattaccaggacccgatggttacccaggcatc
agaggtcctgatggtccactgggttctgtaggtccaagaggccctgaaggataccctggt
cagcccggtcctcccggtcccccggggccaatggggagtcgtagtgatggatatcaagga
gagagaggagacaagggtgacgtcggtcttcccggaccaagtggtactccaggcgacggg
tcactgacgagtgaacaaactctcaccatctacaaaggagataagggcaatcctggacca
aaagggttgagaggatttcctggtactgctggacggcctggaccttttggctatcgtggt
gaatatggagagaaaggcattcctggatacccggggggaagaggtgctcctggttttaat
gggcctcctggagctccagggcaacagggatacagaggtaacccaggattccctggccaa
cctggatacatcggagccaagggagaccagggagatcccggaccaccaggaccaccaacg
tatgtgagtgaattgggcactactgttcaaggaccaccaggtgaaccaggttacaatggc
ctgcctggggcccgtggtgaccagggacctccagggttcccaggaccaccaggacggcca
gggattggtggatttggttcaggtggacccggatccaatggttttcccgggacccctggt
ccaaagggagagaagggtaatgcaggcataccaggctttggctctgaaggattccccggt
tcccctggattacctggagcccctggccttcctggtcctcctggcccttctagctttgtc
caaggcccctgtgtcatccatcctgagtgggtctccattccccaaggttctaccacagga
ggttcatctagcatacctggaccacctggggcaactggacccagaggtcagccgggtaac
acgggatacaaaggcttcagaggtgaccctggcgactgtgcctgtgcaggagggtcccgg
agtggacctggcatacctggactccctggaaataacggcaaccctggtttccctggacga
aagggtgaggccggcgatcaaggctcgcccggcttcaacggcgtcccgggatctcctggg
cgtgctggtgaaagaggttttgttggccgcaaaggtgagaagggtgcatcctactacccc
tcctacggtgtgggggtcaaaggcgagcttggcgctcctggacccagaggacctacaggg
gaaactggaaaacctggcagagacggacaacctggcttccctggagcccctggacagccg
ggcgatggcggctttttttcatatggagagaaaggcttccccggattcccggggtcaaag
ggtcgacccggtggtcccggtgagccgggctccggctacattggaactcctggctttcga
ggagagcccggagaacctgggatacctgggataccaggagctccaggtttacctgggcca
agaggtgaaaacggctgtgaaggggttaatgacgacgaagagggaacgggacaagtgcta
ccttgcaccattcctggtgaggttggaaaccccggtgttcccggcatacctggatctcca
ggtcctaaaggtcagccaggtttcccaggaggctctggtcgtccagggttagatggtagc
ccaggacagaaaggagaccccgggtttggaggccagcctggaccccaaggtttccctgga
cccagaggggaccctggtattccaggtattccaggacagggttatgatggaggcaggggg
aaggatggcgctccggggcgacccggagccaaaggtcagcccggagaggtactaggagcc
acgcctggaccttcaggacaaaacggtttacctggagcccctggagacaagggtcagccc
gggacaccgggaggacctggtttggctggcgaggatggacgtattggcgttccgggactg
aaaggagagcgtggactggatggtctccctggttttcctggttcccctgggcctccaggg
gaaccaactggtggcattccaggtccgcgtggagctcctggcaaccgagggtcgagcgga
tcaccaggtttccctggtcgcaagggagatagaggagacccgggtttccaagggccagca
ggaatgaagggaaccccagggttacctggtactcctggaacacctggttcaaggggaccc
cctgggcctgcaggaccaggaactagagagggaatcccaggagcaccaggaaggaagggt
gagacgggtttccccggactgatgggtttccccggactaccaggtcgtcctggaagtcct
ggatttcctggagggaaaggagaagctggagggccaggaagaaacggactcgctggtggt
cccggatatcctggacagaagggtgagagaggtttccctggtctccccggcctgccctct
cctcccctccgatcagagttggtggagaaaggagaaccagggaccccaggtttcagcgga
cttcctggtttccctggacccagaggtgacaagggtctgccaggtctccctggtcgccag
ggtgtgcctggacttcctggttttgctgagctgagcaaaggacttccaggagagcctgga
ttcccagggcgacccggaggcccaggcttccctggaccaaagggagaatctggaatcaat
ggattccccggctcctctggaccaaggggtgacgatggcgcgcctggattacctggaacc
cctggtgaatttggtcggcctggtggtaaaggtctacctggagagtcatacggttatcct
ggaggcccaggggctaaaggccagcccggagagccaggcttcccaggtggacgcagcaac
aacggccctcccggtgacaatggctttccaggaagccctggtttccctggagcaaaggga
gctcctggtgaagcgggacgtcctggaataatgggctcccccggtttccctgggccgaaa
ggcttgtccagcgtcccaggaaggagaggacaagatgggtctcctggtttgcctggaagt
cctggaggtcttggagccaaaggtttgcctggatcccctggtttggatggacttaatgga
cttggtggagctaaaggcctccctggaaccccaggagtgaatacgggaggccgtccaggg
gctcctggtattccaggattgaagggagaccgaggcgtctcttatccaggagctccgggc
ttccccggcccaaagggagagagaggagactcaggtggtcccggactcccagggttcccc
ggtaggcctggaccccctggtgaaacaattgggtcagatgtacctggagctctgggagac
cctggcctccccggacttgacggagagtatggtttccaaggtccgccgggtcctcctggg
cctcctggtccaggcacatcccagggagacagaggtgatgctgggcttccaggtttccct
ggctcccctggtaggaaaggagaagcaggaggccctggaggcccaggcgctcctggcagc
tccggtttcaaaggagcacgaggtgagagtggcttcagtggaggtcctggtctgaaaggt
tttcctggcgatcctggttactatggcggcaagggacccaagggacttcgaggaccccct
ggtcgtaagggtatccctggaatcacgctgcctttgccaccacgagagctgcagaggtcc
tttggagacgtgggcatcccaggagacaatggaggctctggtttcccaggagagcctggt
cagcctggaatgcctggacgtccaggtcctaagggtcgtccgggccctgtgggcaaactt
ggaaggactggatcgcctggtcaagccggacttgtcggtgacaccgggccccccggtttc
cctggacccactggagaacaaggtctccctggtaatgtcggtcgtcctggccctcctggc
gccgtgggccgcagtcacggcatcggttacacactggtgaagcacagccaggacttccag
gtccccatgtgtcctcagggcatggccaagctgtgggacggatacagcctgctgtacgtg
gagggacaggagaaggcacacaaccaggacctaggtcagccaggatcgtgcctccccaag
ttcagcaccatccccttcctctactgctcccccaacgaggtctgctattacgccagccgc
aacgataaatcgtactggctgtcaacaacggcttccatacccatgatgcccgttagcgag
tcacagatacagccgtacatcagcaggtgctccgtgtgtgaagctccgtctcaggccgtg
gccgtccacagtcaggacgtgaccatccccacctgtccgcctggctggaggagtctctgg
ataggatactctttcctcatgcacacagcagctggtgccgagggcggcggtcagtccctt
gtctctcccggctcctgcctggaggatttccgtgcaacaccattcatcgaatgcaacggg
gccaagggtacctgccactactttgccaataagtacagcttctggctcaccacagtggat
cccaaccagcagttcctctattcgccagcgcaggaaacccttaagggaggccaggagcgc
tccaaagtcagccgctgccaagtctgtagcaagatcttgtag
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integrated database retrieval system
