Antennarius striatus (striated frogfish): 137592366
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Entry
137592366 CDS
T10427
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137592366 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
astr03041
]
137592366 (snrnp200)
Enzymes [BR:
astr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137592366 (snrnp200)
Spliceosome [BR:
astr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137592366 (snrnp200)
Complex C
U5 SnRNP specific factors
137592366 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
137592366
NCBI-ProteinID:
XP_068166594
LinkDB
All DBs
Position
3:complement(26825584..26837337)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARNLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVNKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDIKKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPTDDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCAMLASAQSEAEKERIIGKMESDPELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDIDRGESMAPRQLLDLDDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSDDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLFKTAMESDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLPDMLN
AEIVLGNVQNSKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTSAN
VLDKNSLVKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKSKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFIDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFVVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLTPFLAKINDSTLKETLANGVGYLHE
GLSPTERKIVEQLFNSGAIQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTEKGVESI
FDIMEMEDEDRTALLQLSDAQMADVARFCNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcccgtaacctgcagtacgagtacaaggcgaactcaaatttggtg
ttgcaagctgatcgatctctgatcgaccgcacgcggagagatgagcccaccggagaggtt
ctgtccctggtcaataagctggaggggaccaagatgggtgacaaggctcagaggaccaaa
ccccagaagctggaggagagacgagacaagaggcgaaaaagagatgaggaccgacacgac
atcaaaaaaatgaaaggcttcacgctcctctctgaaggcattgatgagatggtgggtatt
gtgtacaagcccaaaaccaaggaaaccagagagacgtatgaagtactgctcagcttcatc
cacgctgctttgggagatcagccgcgtgatattctgtgtggagcggctgatgaagtccta
gctgtcctgaagaacgataaaatgagggacaaggaaaggcgccgtgaggtggagcagctt
cttggacctactgatgacacacgctaccacgtgttggttaatcttggcaagaagatcaca
gattacggaggcgacaaagacctacagaatatggatgacaacatcgatgaaacgtacgga
gtgaatgtccagtttgaatctgatgaggaggaaggggatgaagatcagtttggagaagta
cgagacgaacactcagacgaagacagcgaaggagaggaggcgggtgtgggctgtgctctt
tcagccaatctcggtgccacgggtgatgtgatgactgtgaagaagaaagatctgcatcca
cgcgatattgacgccttctggctccagcgtcagctcagccgtttctacgatgacgccatt
gtctcccaaaagaaagcagatgaggtcttagaaatcctcaagaccgccagtgatgacagg
gagtgtgagaaccagctggtgctgcttctgggcttcaacaccttcgacttcatcaaaatt
ctccgtcagcaccggcgcatgattcagtattgcgccatgctggcgagcgctcagagcgag
gcggaaaaagaacggatcattggaaagatggaatctgatccggaactgtcgaagattctt
taccagctgcaagagacggagaaggaggatattattcgggaggagcgatctcgcagggag
agggtgaggaagtctcgtgtcgacgacttggaagcgatggacatcgaccgtggagagtcg
atggccccccgacagcttctggaccttgacgacctggccttcacgcagggcagccacttc
atggccaacaagcgctgccagctgccagacggctcgttccgcaagcagcgcaaaggctac
gaggaagtccacgttcccgcgctcaagccgaagcccttttctgacgacgaggtgctcgtc
gccatcgagaagctgccaaagtacgcgcaggccggattcgaagggttcaaaacactgaac
cgcatccagagcaagctgttcaagacagccatggagagcgacgagaacctgctggtctgc
gcgccaacgggagccggaaagaccaacgtcgctttgatggcgatgctgagagaaatcgga
aagcacataaacatggacggaaccatcaacgtggacgacttcaagatcatctacatcgcg
ccgatgcgctctctggtgcaggagatggtggggagcttcagtaagcgtttggccagttac
ggcatcactgtgtctgagctcacaggagaccaccagctctgcaaagaggagatcaacgcc
actcagatcatcgtctgcaccccggagaagtgggacatcatcacccgtaaaggtggcgag
cgtacctacacccagctagtgcggctcattatcatcgatgaaatccatctgctgcacgac
gaccgcggacccgtcttggaatctctggtggcaaggacgatccgcaacgtggagctgacg
caggaggacgtgcgtctgctgggcctcagcgccacgctgcccaactatgaggacgtggcg
acctgcctgcgcgtcgatcccgccaaaggactcttctacttcgacaacagcttccgccct
gtgcctctggagcagacgtacgtcggcatcaccgagaagaaggccatcaagcgtttccag
atcatgaatgagatcgtgtatgaaaagataatggagcacgcaggaaagaaccaggttctg
gtgttcgtccactccaggaaggaaacaggaaaaaccgccagagccatcagagacatgtgt
ctggagaaggacaccctgggcctgttcctcagagaaggttcagcttctactgaggtgttg
aggactgaggctgagcagtgcaagaacctcgagctgaaggacttgcttccctacggcttc
gccatccaccatgctggaatgaccagggtggaccgaacgctggtggaggatctgtttgcc
gatcggcacatccaggtcctggtgtccaccgccaccctggcttggggtgtcaacctgccg
gcacacaccgtcatcatcaaaggcactcaggtgtacagtccagagaaggggcggtggacc
gagctgggagccttggacatcctacagatgctggggcgagccggtcgtcctcagtacgac
accaagggcgagggaatcctgatcacgtcccacggcgagctgcagtactacttgtctctg
ctcaaccagcagctgcccatcgagagccagatggtgggaaaactgcccgacatgctcaac
gccgagatcgtcctgggaaacgtgcagaactccaaggatgctgtgaactggctcggatac
acgtacctgtatgtacgcatgctccgcaaccccaccctgtacggcgtctcccacgacgac
cggagttcggaccccctgctggagcggcgcaggatggatctggtccacacgtctgccaac
gtcttggacaagaacagcctggtgaaatacgacaagaggacgggcagcttccaggtcacc
gacctgggacgcatcgccagccacttctacatcacccacgattccatccagacctacaac
cagctgctgaagcccaccctcagcgagatcgagctcttcagagtcttttcactgtcatcc
gagttcaggaacatcacagtcagagaggaggagaagctggagctgcagaagctgctagaa
cgagttcccatacctgtgaaggagagcatcgaggagcccagtgcaaagatcaacgtgctg
ctgcaggcgtacatctcccagctcaaactggaaggctttgctctcatggccgacatggtg
tacgtcacacagagcgccggcaggttaatgcgggccatatttgagatcgtgctcaaccgg
ggctgggctcagctgacggacaagaccatgaacctctgcaagatgatcgacaagaggatg
tggcagtcgatgtctccgctgcgtcagttcaggaagctgccggaagaagtgatcaagaag
atcgagaagaagaacttcccgttcgagcgtctgtacgacctcaaccacaacgagatcggc
gagctcatccgaatgccaaaaatggggaagaccatccacaaatacgtccaccagttcccc
aaactggacctggccgtccacctgcagcccatcactcgctccacgctgaaggtggagctc
accatcacgcccgacttccagtgggacgaaaagatccacgggtcgtcggaggcgttctgg
atcctggtggaggacgtggacagtgaggtcatcctccaccacgagtacttcctgctcaag
tccaaatatgctcaggacgagcacctggtgacgttctttgtcccggtgttcgagcctctg
ccgccgcagtacttcatccgagtcgtgtccgaccgatggctctcctgtgagacgcagctc
cctgtgtccttccgtcacctgatcctaccggagaagtaccccccgcccacggagctgctg
gacctgcagccgctgcccgtgacggctctcaggaactccgcctttgaggctctctaccag
aacaagttccccttcttcaaccccatccagacacaagtgtttaacgccgtgtacaacagc
gatgacaacgtgtttgttggagcccccaccggcagtgggaagaccatctgtgcagagttt
gctatcctgaggatgctgctgcacaacgccgaaggccgctgcgtctacatcaccccgatg
gaagccctggctgagcaggtgttcatcgactggcaccagaagttccaggacatcctgaac
aaaaaggtggtgctgctgacgggagaaaccagcacggatctgaagctgctgggaaaagga
gacatcatcgtcagcacccccgacaagtgggacatcctgtcccggcgctggaagcagagg
aagaacgtacagaacgtcagcctcttcgtggtggacgaagctcacctgatcggaggagag
aacggacccgtgctggaggtcatctgctccaggatgaggtacatctcctctcagatcgag
cgtcccatccgaatcgtggccctcagctcctccttgtccaacgccaaagacgtggcgcac
tggctgggctgcagcactaccgccaccttcaacttccaccccaacgtcaggcccgttcct
ctggagctgcacatccagggcttcaacgtaagtcacacccagacccgcctgctgtccatg
gccaaacccgtttaccacgccatcatgaagcactcgccctccaagccggccgtggtgttc
gttccctcccgcaggcagacccgcctcacggccatcgacatcctgacgttctgcgccgcc
gatgtggttcctcagaggttccttcattgcactgagaaagacctcacccccttcctcgcc
aaaatcaacgactccacgctgaaggagactctggccaatggggtgggctacctgcacgag
gggctgtccccaactgagcgcaagatagtggagcagctcttcaactccggagccatccag
gtggtcgtctcctcccgctcgctctgctggggcatcaacatctccgctcacctggtcatc
gtcatggacacgcagtactacaacggcaaaatccacgcatatgtggactatcccatctat
gacgtcctccagatggtgggaaaggccaaccggccgatgctggacgacgagggacgctgc
gtcatcatgtgtcagggctctaagaaggacttcttcaagaagttcctgtacgagccgctg
ccggtggagtctcacctggaccactgcctccacgaccacttcaacgcagagatcgtcacc
aagacggtggagaacaagcaggacgccgtggactacctgacctggaccttcctctaccgc
cgcatgacccagaaccccaactactacaacctgcaaggcatgtcccaccgtcacctgtcg
gaccacctgtctgagctggtggagcacacgctgcacgatctggagcagtccaagtgcatc
agcatcgaggacgagatggacgtggcgccgctcaacctgggcatgatcgccgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtctctgaacgccaagacgaagatc
cgcgggttaattgagatcatctccaacgccgccgagtacaagaacattcccatcaggcat
cacgaggacacgctcctccgacagttggctcagaaagtcccccacaaactgaacaacccc
aagttcaatgacccccacgtgaagaccaacctgctgctgcaggcccacctctccaggatg
cagctgagcgccgagctgcagtcggacaccgaggagatcctgagcaaggcggtgcgtctg
atccaggcctgcgtggacgtgctgtccagtaacggctggctgagccccgccctggcggcg
atggagctggctcagatggtcacccaggccatgtggtccaaagactcctacctcaagcag
ctgcccttcttcacctcggagcacatcaagcgctgcacagaaaagggggtggagagcatc
ttcgacatcatggagatggaggacgaagacagaaccgccctgctgcagctgtcggacgct
cagatggccgacgtggctcgcttctgcaaccgctaccccaacatcgagctgtcctacgag
gtggccgagaaggacaacatcaagagcggaagtccagttctggttcaggttcagctggag
agagaggaggaggtgaccggacccgtcatcgcacctctcttcccccagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaagtctaacagcctgatctccatcaagaggctg
acccttcaacagaaagcaaaggtcaagctggactttgttgccccggcgatgggcgtccat
aactacaccctgtactttatgagtgacgcctacatgggctgcgaccaggagtacaagttc
agcgccgacgtgaaggaggccgacagcgatggagacagcgactccgactga
DBGET
integrated database retrieval system
