Antennarius striatus (striated frogfish): 137604598
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Entry
137604598 CDS
T10427
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr04510
Focal adhesion
astr04512
ECM-receptor interaction
astr04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
astr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137604598 (col4a1)
Glycosaminoglycan binding proteins [BR:
astr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137604598 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137604598
NCBI-ProteinID:
XP_068184546
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Position
12:complement(16127554..16160768)
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AA seq
1640 aa
AA seq
DB search
MLLPSCALLLLAVLYSSVDLTGAEGCGTSCGKCDCSGVKGVKGERGFPGLQGNMGFPGMQ
GPEGPAGPMGVKGDIGQPGALGLKGVRGPPGLPGFPGNPGLPGINGNDGPQGPAGIPGCN
GTKGDRGRDGSPGFDGPQGPPGIPGVPGSKGDPGGVIGIVPVKGDRGFPGTPGLPGTGGP
PGPIGPPGPRGYQGPKGDHGPPGPAGEKGDRLAFVSEKGEKGDRGFRGPPGPPGPPSQGV
EGHTTVHVPGPQGEKGLPGDKGDKGFCISPHPGSKGEPGPHGQRGKPGKDGEHGPKGEKG
FPGAPGYTGSQGEKGERGPPGFGTGAPGPPGPPGLPGLQGEKGYLGPQGEPGPPGHHIEG
PRGESGQKGDTGEKGNRGIEGESLVGPPGQPGFPGAPGPPGQPVDPNECNNEKGDPGPPG
PPGLQGELGQKGDRGDTCVQCESLGPPGLPGNQGPKGDQGPPGPVGGKGEKGQTGVSGQP
GRPGLTGSPGLMGAPGAVGEPGDIFVAPGLKGDKGQPGLPGSQGQPGLDGEPGRDGIPGI
PGIKGESGKEGIKGERGPTGDSGLIGPPGERGPPGVPGFGRPGESGEKGSHGRPGLPGTP
GLPGLKGEPGQGILTPGPPGVPGVQGETGRPGIQGDRGQPGETGLPGFPGQKGEHGLPGI
GLPGPTGPKGINGIPGAPGLPGEPGKQGQDGLAGQPGVSGQKGEPGRGLPGPKGSQGFPG
VTGFPGEKGNSGLPGVPGQEGQTGPIGPQGIKGDVGPPGPPGQVGLPGGPGKGLPGAPGP
QGQRGEPGPFGREGEKGDKGYPGPPGLDMPGPQGEKGSIGFPGLPGSKGFPGNPGLPGRD
GQIGNQGPKGEMGVMGTPGVPGFPGPPGQPGSSGLRGDPGISGPRGEVGQPGLKGERGDR
GLQGPPGNMTKIEMEHMKGDKGDTGDTGNTGATGQKGFRGLPGDPGMPGKDGEPGMPGKP
GEKGEPGLPGQPGYMGPPGQKGTVGEMGIPGPVGPKGIKGDTGTPGHHGFKGTDGQKGEK
GLAGEPGIGIPGTPGEKGQIGQPGFPGLPGEKGLKGQEGMPGKPGLQGSKGEKGTIGYTG
QPGRPGEKGVPGLPGSSGEAGIEGRPGESGLQGAPGPPGQKGESGVDGIPGSSGERGDPG
LPGRGFPGPPGGHGVKGDKGGPGFPGTPGHPGIPGIKGDKGFPGLQGFQGEPGERGLPGV
SMEGPKGERGETGQPGESGLIGSPGSPGVPGRHGNKGEKGDQGNPGFQGESGHKGDPGVS
GLPGKPGLPGIDGPRGERGLQGVPGFPGVKGSYGDIGLKGELGDRGFPGEKGNEGPPGPP
GPHTIIKGDIGFPGVQGFPGPQGPPGLPGQKGQQGVTGLGGPKGEDGVPGYHGQPGAKGE
SGLPGPQGPRGHPGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQTVDVPFCPDGTSLIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMTMAPVTGVSIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPTT
LKAGNLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtcctgcgcgctgctgctgctggcggttctctactccagcgtcgacctg
accggggctgagggttgtgggacttcatgtggaaaatgcgactgcagtggtgtgaaagga
gttaagggtgagcgtggatttccaggacttcaaggtaatatgggattccctgggatgcaa
ggacctgaagggcctgcagggccgatgggcgtcaagggagatataggccagccgggggct
cttggactcaaaggagtgaggggtccccccggtctgccaggcttcccaggaaatccagga
ctcccaggcatcaatggaaacgatggcccacaaggtccggcaggaatcccaggatgcaat
gggactaaaggagacagaggaagggatggttctcctggttttgatggtcctcaaggacct
cctggcatcccaggagttcctggatcaaagggtgaccccggtggtgtgatcggaatcgtt
ccagtgaaaggagacagggggttccctggcacacctggattacctggaacagggggacca
cccggacctatcggccccccaggacctcgtggctaccaaggacccaaaggagaccatgga
cctcctggacctgctggagagaagggcgacaggctggcctttgtgagtgagaaaggagaa
aagggtgaccggggatttcgcggcccccccggccccccagggcctccatcacagggagtg
gaaggacacaccacagtgcacgtacctggacctcagggagagaagggccttccaggagac
aaaggagacaaaggtttctgcatctcccctcaccctggttccaaaggtgaacccggacca
cacggacaacgaggtaaacctgggaaggatggagaacatggaccaaagggagaaaaaggc
tttcctggagctcctggatatacaggttctcagggtgaaaagggagaacgaggaccaccg
ggatttggtactggtgcacctggtccacctggtcctcctggtctcccggggttacaaggg
gagaaaggttatcttggtcctcagggagagcccggtccaccaggacaccatattgaagga
cctcgtggggagagtggtcagaagggagacacaggtgagaaaggaaacaggggcatagaa
ggagagtctcttgttggacccccaggacagccagggttcccaggagccccaggacccccc
gggcagccagttgatcctaatgaatgtaacaatgagaagggagatcctggaccaccaggg
cctccagggttacagggcgaactgggacaaaaaggggacagaggagacacctgtgttcag
tgtgaaagtttgggccctcctggattacctggcaaccagggccctaaaggcgaccaagga
cctccagggccggtaggagggaagggagaaaaaggtcagactggtgtttctggacaacct
ggaagacctggtttaacaggcagccctggattgatgggagcccccggtgctgttggtgag
ccaggggacatttttgtggctccaggtttgaagggagacaaaggtcagcctggtcttcct
ggatcacaggggcagccaggtctggatggagagccaggaagagatggtatcccaggtata
cctggcatcaaaggagaatcgggaaaagagggcatcaagggtgagcgtggacctactgga
gactctggtcttatcgggcctccaggagagaggggcccgcctggtgtaccaggctttggt
cgcccaggagagtctggagaaaaaggcagtcatggaagaccaggccttcctgggactcct
ggattacctggcttaaaaggtgagccaggtcaaggtatcttgactcctgggcctcctgga
gtacctggagtacaaggagaaaccggcagacctggaattcaaggtgacagaggccagcca
ggggaaacagggttaccaggtttccccggacagaagggtgagcatggactccctggaatt
ggacttccaggcccaactggtcctaaaggaatcaatggaattccaggagctccaggatta
cctggagaaccaggaaagcaagggcaggatggtttggctggacaacctggtgtatcagga
caaaagggtgaaccaggacgtggtcttccaggcccaaaaggttctcagggcttcccagga
gttacaggcttcccgggagagaagggtaacagcggactaccaggtgttcctggacaagaa
ggccaaacaggaccaatagggcctcagggaataaaaggtgatgtgggacccccaggacct
ccaggacaggttggcttaccaggtggtccaggaaaaggcttgcctggggctcctggacca
caaggacaacgtggagagcccggtccatttggtagggaaggtgaaaaaggagataaaggg
tatccaggtcctcctggtttggacatgcctgggcctcagggagagaagggttccattggg
tttccaggattgccaggttcaaaaggattccccggtaatccaggtttgccaggcagggat
ggacaaattgggaatcaaggccctaaaggtgaaatgggggtaatggggacacctggagta
ccaggctttcctggaccacctggacaacctggatcatctggtctgagaggggatcctggc
attagtggaccaagaggtgaagttggacaacctggactaaaaggagagagaggagataga
ggtcttcagggaccccctggaaacatgactaaaattgagatggagcatatgaaaggagat
aagggggacaccggagacacaggtaacactggggccactgggcaaaaaggcttccgtgga
cttccaggagaccctgggatgccaggcaaagatggagagcctggaatgccagggaaacca
ggtgaaaaaggagagcctggtttacctgggcagcccggctacatgggaccacctggacag
aaaggcaccgtgggagagatgggaataccaggtcctgttgggccaaagggcattaaagga
gacactggtaccccagggcatcatggattcaaaggcacagatggacagaaaggagagaag
ggcttagctggtgagccaggtattggaatccctggaacaccaggagaaaagggccagata
ggacaaccaggattcccaggattgccaggggagaagggtctgaagggtcaagagggtatg
cctggtaaaccaggcctgcaaggatccaaaggagaaaaaggaaccattgggtatacaggt
cagccaggtagaccaggtgaaaagggagtccctgggcttcccgggtcatcaggagaagct
ggtattgagggtcgtcctggtgaaagcggcttacagggggcccctggccctccgggacag
aagggagagtctggagtggacggcatcccggggtcatcaggggagagaggagacccaggt
ttacctggacgaggcttcccagggccacctggagggcacggtgtcaaaggtgacaaaggt
ggtccaggcttccctggcactccaggccatccaggtatacctggaatcaaaggagacaag
ggattcccagggttacagggatttcagggtgagccgggagagagggggctcccaggtgtc
tctatggagggccctaagggagaaagaggagaaactggacagcctggagaatcaggcctc
ataggatcaccggggtctcctggtgttcccggtaggcacggcaacaaaggagagaaagga
gaccagggtaacccaggatttcagggcgagtcaggacataagggtgaccctggagtctct
gggcttcctggaaaacctggtctcccaggtatcgacggcccaagaggagagaggggatta
cagggtgtccctggattcccaggtgtaaagggtagttacggtgacattggactgaaagga
gagctgggagacagaggattccctggagaaaagggaaatgaaggccctccaggacccccc
ggccctcacaccatcattaaaggagacattgggtttccaggggttcaaggttttccaggt
ccccagggaccacctgggctacccggacagaaaggacaacaaggtgttactggtcttggt
gggccaaaaggtgaagatggtgtgcctggatatcatggtcagcctggagccaagggagag
tctggcctcccagggcctcagggacctagaggacaccctggccccccaggacctgatggt
gttccaggtcaagtgggtccaccaggcccttcctctatggatcacgggttcctggtgact
cgtcacagccaaacggtggacgttccattctgtcccgacggaacctctctcatatacgac
ggctattccttgctctacgtccagggcaatgaacgttctcatgggcaggacttaggtacg
gcgggcagctgcctcaggaagttcagccccatgcccttcttgttctgtaacattaacaat
gtgtgcaacttcgcctcccgtaacgactactcctattggctcacctctcctgaacccatg
cccatgaccatggcacctgtgactggtgtcagcatcaaacccttcattagcaggtgtgct
gtgtgtgaagccccagccatggtgatagcagttcacagtcagaccataatgatcccgccg
tgccctcgaggatgggactctctgtggatcggctactcctttgtcatgcacaccagtgct
ggtgcagagggttcaggtcaggctctggcctctcctggctcctgcctggaggaattccgc
agtgccccgttcattgagtgtcacggtagaggaacttgcaactactacgccaactcctac
agcttctggcttgccacaatcgaagacagtgaaatgtttacgaaacctgtcccgacgaca
ctgaaagcaggcaatctccgaactcacataagccgctgccaggtttgcatgaagaggaca
taa
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