Antennarius striatus (striated frogfish): 137605847
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Entry
137605847 CDS
T10427
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137605847 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
astr03021
]
137605847 (pcf11)
03019 Messenger RNA biogenesis [BR:
astr03019
]
137605847 (pcf11)
Transcription machinery [BR:
astr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137605847 (pcf11)
Messenger RNA biogenesis [BR:
astr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137605847 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
SHOCT
Zf-C2H2_ZNF451_2nd
POC1
Motif
Other DBs
NCBI-GeneID:
137605847
NCBI-ProteinID:
XP_068186797
LinkDB
All DBs
Position
13:complement(3864524..3874755)
Genome browser
AA seq
1608 aa
AA seq
DB search
MDCLLINAFASEKVGVVFPWSIDSKMDDKAARQDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSTEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNSSIHVNPK
FLKQSEEVSSPPPVPSPQPAAPAQAATPASASTPAPTPAAAAAPAPQPTPPVSQYSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLVGGFVLPTPTPLSTPATQSVTPKPVCQ
PAPAVRPWVPPQTQPDPKLSTRDPRLNRNGPPAVSQSKEQLTGKKADTTTTGSPAPMPEK
PARPDKVKPLRKEVQEEKPKSKSPSPMTKGVQNKSKQPEAEIQKPADTKKDPRLRKRTQD
KPVESKDEEIKEKKRSMDKEKKEKEEASQGGDPQRSSKGGKLVNGSVTKHSREDPVDRSG
GNARTHARKRTRSRSRSRSPAGSPKRKDRRSPKSRTRSTSLSPSDPHKVNKPRRVRTDEP
EHGKPGRDDRPAAKKNQSESRRSKRPAEDRRSESRDSPRNHDGGNKESKDGPHRWRSGWE
ENKHLKPPEDSHAKPGPPRHKPHNNPTRPSTPRTPKHRLSVDANLQIPEALNSASKKDLL
RRASKRLESGEISEEDFLNMAHKIKHFFQYQEEKQHHSENWDDSGKFPKKLLTTPASGQP
RPLGNMDAAELSYYEHKSKLRKTQVNHRVTGEEWEGEANAESEEAGQGEKTGSSRSGGHL
PSRKYSRTSRDRPGERRSKDREEPQPPHGPMIEDYNHGKEFLSLKSMPSLRFRRRVDPRD
SNDREWTSPLMERYDGREEKKSGYAAKRRYGPPADSRHSDPRRPEGPPSSGTVVFRNCPS
PAGLDPSGPRFERERLSPLHQRESAEGSPIPRFESPNSEHSDDGPLNMDVLPSHPHPHPP
KSILKGPARGPLSSVRQHSNSPGHTPPHDGGLHGSRYDGPEHIGPSRPHPPGWYDVAGPG
HYDDASRFDVPLPQGSSRFDGGGPPHHGMPERCDGPHMPRGPLRGGDGMGRFDPQGLGRF
DGPLGQQPVRFEGPGPGPGHFEHFNNMTSGPDSGPMGFQQQGPLCFDGPPNQMGPLRFEG
PGPIHYDGPLQAGPRFESSHQGGPQLYEPAPGQQVPIRFAAQHNLQNPMRPMAPSIYENP
IPPQQNFNMAPQPFPEPMNPQFPAGSMAFPAQSNLQQLGNFNIQPAQPFNQQGPAPFYTP
TVGMQQPVNMMNLNQPFLSQNPVPFSQSQQVVPPENHFGQVDVNDLLSKLISNGIIAPSQ
PDAALTSSTETSTPAPTASPAVEEEEEEEVEVEEDIPDLTSFTIDDMKQRYESVVTKLYS
GNQCCLCSMRFTTSQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYTLRDWIEFEEIAD
LEDRAKSQFFEKENEEEEQKNQAAAKEKEFQSVKAAKDQVGELCEICQEPFETYWVEEEE
DWFLKNAVRVDDKNFHPACFEDYKNSTYIDATPSPNKLLTDHPLSAFVKEEAEEESTSCS
VEAAAAAAAAAAAATEVKQEVEPQTVELPDVKKEEKDDLSDVQSDQKV
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgttaatcaatgcctttgctagtgagaaggttggcgtagtctttccctgg
tcgatcgactcaaagatggacgacaaagcggcgaggcaagatgcctgccgagagtatcag
tcctcgctggaagacctgacattcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccatcaaccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttacgatcgacgtgggac
gatgtctttcctctgaagaaattgtatgcactggatgttcgggtcaattctgtggacccg
gcctggcctatcaagcctctacctcctactgtcaactccagcattcatgtcaaccccaag
tttttgaaacagtccgaggaggtttcctctccgcctcccgtcccatccccacagcctgca
gctccagctcaggctgcaactcctgcttcagcttcaactcctgctccaactccagctgca
gctgcagctcctgcaccccagccaaccccccctgtcagccagtacagcctgacccaagag
cagctgatccgtcagcagctgctggccaaacaaaagcagctcctggagcttcagcagaag
aagatcgaactggaattggagcagacaaaggctcagctggttggtgggtttgtgttacca
acaccaactccattgtccactccggccacgcagagcgtaacccctaagccagtttgccaa
cccgctccagcggtccgaccctgggtccctccgcagacacagccggaccccaaactgtcc
acaagggaccctcgtctaaaccgcaatgggcccccagctgtgtcccagtccaaagaacaa
ctcactgggaagaaagctgacacaaccacaacaggaagtcctgcacctatgcctgagaaa
cctgcccggccagacaaggtcaagcccctgaggaaggaggtgcaggaggagaagcccaag
tctaagtctccttctccgatgaccaaaggcgtccagaataaaagcaaacagccagaggcg
gagatccagaagccggcggacacaaagaaagaccccaggctgaggaaacgcacgcaggac
aagcctgtggagtccaaggatgaggagataaaggagaaaaagaggtccatggacaaggag
aagaaagagaaagaggaggcaagccagggaggagaccctcagaggtcgtccaaggggggg
aagctggtgaacggctccgtgaccaaacacagtcgtgaggatcctgtagatcggtcagga
ggcaatgcccgaacacacgccaggaaacgcacccgctcaagatccagatcgcgttcccct
gctgggtcccccaagaggaaggacaggcgatcccccaagagcagaaccaggagcacctcc
ttgtccccatcagacccccataaagtcaacaaaccaagaagggtccgaacagatgaacca
gagcacggcaagcccggccgagacgaccggccggcagccaaaaagaaccagtcggaaagc
cggaggtctaagagaccggcagaggaccggcgctccgaatccagagactctccacggaac
catgacggaggcaacaaggagtccaaggatggtcctcaccgctggaggagcggctgggag
gagaacaaacatctgaagccccctgaagacagtcatgcgaagcctggacccccccgacac
aaaccgcacaacaacccgactcgcccttccaccccccggaccccgaagcaccgcctcagc
gtagacgccaacctgcagatacctgaagccctcaactccgcctccaagaaggacctgctg
cggagggccagtaagcgtctggagagtggggagatttctgaggaggacttcctgaacatg
gcccacaagatcaagcatttcttccagtatcaggaggagaagcagcatcactctgagaac
tgggacgactcaggcaagtttcccaagaaactgctgaccacgccggcctccggacagccc
cgccctctcggcaatatggacgcagcagagctgtcgtactacgagcacaagtctaagctg
aggaagactcaggtcaaccaccgagtcaccggcgaggagtgggagggtgaggccaacgcg
gagagcgaagaggctgggcagggagaaaagacgggaagcagccggagtggcggacacctg
ccgtcgcgcaagtacagccggacatcccgagataggccaggtgaaaggaggagtaaagac
cgcgaggagccgcagccgcctcacggcccgatgatcgaggactacaaccacggcaaagaa
ttcctctctctaaaatcaatgcccagtcttcgcttcaggagacgagtcgaccccagagac
tccaatgaccgcgagtggacttctccgctcatggagcgttatgacgggcgtgaggagaag
aagagcggatacgctgcaaagcgtaggtatggccctcctgcagattcccggcactcagac
cctcgaaggccagagggacccccgtcttctggcacggtggtcttcaggaactgtccgagc
cctgctggtctggacccatcgggccccaggtttgagcgcgagcgcctatcccctctgcac
cagagggagtccgctgaggggagcccaataccacgctttgagagccccaatagcgagcac
tctgacgatggacccctcaacatggatgtacttccttcccacccgcatcctcatccccct
aaatccatcctcaaaggaccggcacgaggacctctgtcatccgtccgacagcacagcaac
tctccaggacacacgccgcctcatgatggggggcttcacggctcccggtatgatgggcct
gaacacatcggcccctccagaccacatcccccggggtggtacgacgttgcggggcccggt
cactacgatgacgcgtcacggtttgacgtgcctctcccccaggggtccagcaggtttgat
ggtggcggaccgcctcatcacggcatgccagaaaggtgtgacggcccccacatgcctcgt
ggtccgttaagaggtggtgatggtatgggccggtttgacccacagggcctggggaggttt
gatggcccccttggtcagcagccggtgaggtttgagggaccggggcccggaccaggccac
tttgagcatttcaacaacatgacctccggtcctgactctggaccaatgggcttccagcag
caaggccccctgtgcttcgacggccctcctaaccaaatgggtccattgaggttcgaaggg
cctggtccaatccactacgacgggcccctccaggcaggacccaggtttgagtcgtcccat
cagggcgggccccagctctacgagcccgccccaggccagcaggtcccaatcaggttcgcc
gcgcagcacaacctgcagaaccccatgaggccgatggccccatccatctatgagaatccc
atacccccccagcagaacttcaacatggcccctcagcctttcccagagcccatgaaccct
cagttccccgccggatcgatggcgttcccagctcagtcaaacctgcagcagttgggaaac
tttaacatacagccagcacaacccttcaaccagcagggccccgcccccttctacaccccc
actgtgggcatgcagcaaccggtaaacatgatgaacctcaaccagcctttcctgtctcag
aacccggtgcctttcagtcagagtcaacaggtcgtccctccagaaaaccactttggtcag
gtggacgtcaacgacctgctctcgaaactgatatccaacggcatcatcgcaccctcgcag
cccgacgcggcgctgacctccagcaccgaaacctcgactccggccccgacggcttcacca
gcagtggaggaggaggaggaggaggaggtagaggtagaggaagacatccccgacctcacc
agcttcaccatcgatgacatgaaacagcgctacgagagcgtggtgaccaaactgtactcg
gggaatcagtgctgcttgtgcagcatgaggttcaccacctctcagaccgacatgtacgcc
gaccacctggactggcactttaggcagaaccacgccgggaaggtcgccagcaagaaggtc
acacaccgtcgctggtactacactctcagggattggatcgagtttgaggagattgccgac
cttgaggatcgagccaagagtcagttctttgagaaggagaacgaggaggaggagcagaag
aaccaggcggctgctaaagagaaggagttccaaagtgttaaagccgccaaggaccaagtg
ggagagctttgtgaaatctgccaggagccatttgagacctactgggtggaggaggaggag
gactggttcctgaagaacgccgtcagggtcgacgacaagaacttccatcctgcgtgcttt
gaagattacaaaaattcaacctacatcgacgccacaccgtcgccaaacaagttgctcacc
gatcacccgctgagcgccttcgtaaaggaggaagcagaagaggaaagcacttcctgttct
gtcgaggctgctgctgctgctgctgctgctgctgctgctgctacagaagtcaaacaggaa
gtagagcctcagactgtcgagcttcccgacgtgaaaaaagaggaaaaagacgatttatct
gatgtgcaatcggatcagaaagtgtaa
DBGET
integrated database retrieval system
