Antennarius striatus (striated frogfish): 137608191
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Entry
137608191 CDS
T10427
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
astr Antennarius striatus (striated frogfish)
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
astr03041
]
137608191 (ythdc2)
Enzymes [BR:
astr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137608191 (ythdc2)
Spliceosome [BR:
astr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
137608191 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
Ank
AAA_22
ATPase
Ank_5
Ank_4
AAA_23
AAA_7
ResIII
SRP54
AAA_16
T2SSE
Sigma54_activat
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
137608191
NCBI-ProteinID:
XP_068190441
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All DBs
Position
15:1967197..1985337
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AA seq
1377 aa
AA seq
DB search
MFNGSQKPASNQKKTPRGSMSNGLKEICIEEDVKIALTLSLERFSYSDQKEMEFPSSLSS
TERAFVHRMAQSLGYVSKSKGKGSDRFLTVRKKDCPDRHCPSMPFSPSPNSMYLIRSLLQ
KFPVSSKERSDLQPNSKTGMFAALDPNNSCGSERESGRLNSSLPMVPWSRSPSKLDGFRC
SLPVHEHKEEILQLIRDNRVVLVVGETGSGKTTQIPQFLLDECSRNQEPCRIFCTQPRRL
AAVAVAERVAAERGESVGQTVGYHIRLESRVSPKTMLTFCTSGVLLRTLMSGDASLTNVT
HVIVDEVHERDGLTDFLLTKLRDILQNIPSLKLILSSAALDVDLFLQYFGSCPVIYLKGR
LFEVTELFLEDVLRLTGFNKHDSKKHKEETKKKEKKQNCLTEWCKTVENRCNEEQQRTTE
TNFLQDGSALEADSTFNKMKDVVSEQLAPWLVKEMDSCITKIFLDEDQDAFVQLFNLILY
ENVDVDYRHSQTGSTPLMVAAGRGFLPQMEQLLCIGANINTKASNGWTALDFARHFQQTD
AIDLLTSSIPLLEGGSLDETQLVEEDLNTEDQELLRTYHNSFDDELVDLDLIMDLLHNIS
LTTSDGAVLIFLPGYDEIVTLRDRILYDDQRFSTCSDRYQVFTLHSDMLTLDQKRAMKTS
PPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDALSHVSMLKAVWISKASALQRK
GRAGRCRPGICFHLFSRLRFNNMLEFQVPQLLRMPLQELCLQTKLLAPCCCPVAEFLSKA
PQPPPLHSIRNAVQRLKNIDAMDQKENLTHLGYYLADLPLEPHLGKMVLCAVVLKCLDPV
LTIACTLAYRDPFILPAQGSHKIAALNCRKRFTGNTFSDHMALLGAFQAWQKARRDGWEK
SFCEKNFLSQPTMDMILGMRTQLLGQLRAVGFVRARGDSNICDVNQNSEKWAVVKAALVA
GMYPNLVHINKETATFSSNREKKVLFHPTSVLNRPQMKKNSPAAPAYPTDWLIYDEMSRG
HRMASVRCCSMVTPITVAIFGGCAKLPSSALQQPAAQTAAGAPPDDISDSETEDFAGLRI
DEGLLFQMDREVAELVFELRQKWQNLFLRRIHPVSKPWSQQDEAVVQTLVSVLAAEEEAA
GLQQPTGIGQRPWPMSSEEGAFSGRTSRNGRPPSAIKDKSRRTPATSGALQVKPHLREEP
PLPINPFSGRHSSSSSSCSASVDGAAPSPVKVFSLSSVRYFIMKSSNIKNIEISQQKGIW
STTPINESRLVKAFTDNNLVILIFSVQGSGQFQGYARMTSDVSQESCPDWNFMGLGGVFR
VEWIHKETLPFHFTKYILNPWNENKMIQVSRDGQELEPQTGSQLLSLWDGFSDFSHT
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacggttcacagaaaccagccagcaaccagaagaaaactccccgtggctccatg
tctaacggcctgaaggagatttgcattgaggaggatgtgaagatagcactgaccctctcc
ctggagaggttcagctacagcgaccagaaagagatggagtttccatcgtccctgtccagc
actgagagggccttcgtccaccgaatggctcagtccctgggttacgtttctaagagcaaa
gggaaaggatcagatcgcttcctcactgtcaggaagaaagactgtccggaccgacactgt
cccagcatgcctttcagtccctcccccaattctatgtatttaatccgcagcctgctgcag
aagtttcccgtcagcagtaaggagcgcagcgacctgcagcccaacagtaaaactgggatg
tttgcggcgttagaccccaacaacagttgtggcagcgagagggagagcggacgcctgaac
agcagtctacccatggtgccttggagcaggagtccatccaagctggacggttttcggtgc
tccctccctgtgcacgaacacaaggaagagatcctccagctgatcagagacaacagggtg
gtgctggtggtgggggagaccggctctggaaaaaccactcagatcccacagttcctgctg
gatgagtgcagcagaaaccaggagccttgcaggatcttctgcactcagcccagacgtctg
gccgccgtggccgtggccgagagggtcgcagccgagagaggagagagcgtgggtcagacg
gtgggctaccacatcaggctggagagcagggtctcccccaaaaccatgctgacgttttgc
accagtggggttctcctcagaacgctgatgagtggagacgccagcctgaccaacgtcact
cacgtcatcgtggacgaggtgcacgagcgcgacggcctgactgacttcctgctcactaaa
ttaagggatattcttcagaacatcccgtctctgaagctgatcctgtccagcgccgctctg
gacgtggacctgttcctccagtattttggctcctgtcccgtcatctacctcaaagggcgg
ctgtttgaggtaacagaactgtttctggaggacgtcctgaggctgacgggcttcaacaaa
cacgactccaagaagcacaaggaagagacaaagaaaaaggagaagaaacagaattgtttg
acagaatggtgtaaaacagtggaaaatcgttgtaatgaagaacaacagagaaccactgag
acaaacttcctccaggacggcagcgccctggaagcagacagcacatttaacaagatgaag
gacgtcgtcagcgaacagttggccccctggctggtgaaggagatggactcctgcatcact
aaaatcttccttgatgaagaccaggatgctttcgttcagctcttcaacctcatcctctat
gaaaacgttgatgtggactacagacacagtcagacggggtccacgcctctgatggtagct
gctggccggggtttcctcccccagatggaacagcttctctgcatcggagccaacatcaac
acgaaggcttccaacggatggacagctctagactttgctcgacacttccagcagacagac
gccattgatttactcacatcttccattcctttgttggaggggggcagcctggatgaaaca
caattggtggaggaggacctgaacaccgaggaccaggagctgctcagaacgtatcacaac
agctttgatgatgagttggtggacctcgacctcatcatggatttactgcacaacatctcc
ctcaccaccagtgatggggctgtgctgatcttccttcctggatacgatgaaatcgtgaca
ctcagggaccgcatcctgtatgacgaccagaggttctccacctgctctgacaggtaccag
gtgttcacactacattcagacatgctgactctggaccaaaagagagccatgaagacttct
ccacctggtgtcaggaaaataattctctccaccaacatcgcagagacgagcatcaccatc
aatgatgttgtgtttgtgattgattcaggaaaggttaaagagaaatcctttgacgctctc
agtcacgtgtccatgctgaaggctgtgtggatctccaaagccagcgctctgcagagaaag
ggaagagccggccgctgcagaccgggaatttgcttccaccttttcagtcgactcaggttc
aacaacatgctggaattccaggttccacaactgctgcggatgcccctgcaggagctgtgc
ctgcagaccaagctcctggccccctgctgctgtccagtggctgagttcctttccaaagcc
ccacagccccctcctctgcattccatcaggaacgctgtccagaggctgaagaatatagac
gccatggaccagaaggaaaacctgacccatctgggctactacctcgctgatctgcctctg
gagccccacctggggaagatggtgttgtgtgctgtggttctcaagtgcctggaccccgtc
ctgaccatcgcctgcacgttggcctatcgtgaccccttcatccttcctgcccagggttcc
cacaaaatagctgctctaaactgccgcaaacgtttcaccggcaacaccttcagtgaccac
atggccctcctgggggccttccaggcctggcagaaggcccgcagagacggctgggagaag
tccttctgtgagaagaacttcctgtcccagcccaccatggacatgatcctgggcatgagg
acacagctgctggggcagctccgcgctgtgggtttcgtccgggctcgtggggacagtaat
atctgtgacgtgaaccagaactcagagaagtgggccgtggtgaaggcagcgctggtggct
gggatgtaccccaacctggtgcacatcaacaaggagacggcaacgttctccagtaacaga
gagaagaaggtgctgttccaccccacgtccgtcctgaaccgcccccagatgaagaagaac
agcccagcagcaccggcctatcccactgactggttgatctatgacgagatgagccggggt
cacaggatggccagcgtccgctgctgctccatggtgacccccatcaccgtggccatattt
ggaggatgtgccaaacttcccagctccgccctccaacagcctgcagcgcagacagctgct
ggcgctccacccgatgacatcagcgacagcgagacggaggacttcgctgggctgaggatc
gacgagggcctcctgttccagatggacagagaggttgcagagctggtgttcgaactgagg
cagaaatggcaaaatctgttcctcaggagaatccaccctgtttccaagccgtggtcacaa
caagacgaggccgtcgtccagacgctggtttctgttttggcggcggaggaggaggcagcg
ggtctgcagcagcccaccgggatcgggcagagaccctggcccatgtcctcagaggagggg
gctttctctggcaggacctccaggaacggccgaccccccagtgccatcaaagacaaatct
cgtaggacaccggctacctcaggggccctgcaggtaaagccccacctcagggaggagccc
cctctacccataaacccgttctctgggcgtcactcctccagtagctcctcctgctctgca
tcagtggacggcgctgccccctccccagtgaaggtcttcagtctgtcatcagtgcgatac
ttcatcatgaagagcagcaacatcaagaacatagagatctcccagcagaagggcatctgg
tccaccacacccatcaatgagagcagactggtcaaagccttcaccgacaacaacctggtc
atcctcatcttctctgttcagggctccggacagttccagggctacgctcgcatgacctca
gacgtcagtcaggagagctgcccggactggaacttcatgggactggggggggttttcagg
gtggagtggatccacaaggagaccctccctttccatttcaccaaatacatcctcaacccg
tggaacgagaacaagatgatccaggtcagcagggacggacaggagttggagccgcagacg
ggcagccagctgctgtcgctgtgggacgggttctcagacttcagtcacacctaa
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integrated database retrieval system
