Antennarius striatus (striated frogfish): 137609694
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Entry
137609694 CDS
T10427
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137609694 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
astr03019
]
137609694 (xab2)
03041 Spliceosome [BR:
astr03041
]
137609694 (xab2)
Messenger RNA biogenesis [BR:
astr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
137609694 (xab2)
Spliceosome [BR:
astr03041
]
Complex B
Other components
Prp19-related factors
137609694 (xab2)
Complex C
137609694 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
Tcf25
Big_2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
137609694
NCBI-ProteinID:
XP_068193003
LinkDB
All DBs
Position
16:15285714..15294141
Genome browser
AA seq
850 aa
AA seq
DB search
MLSQDGKSAVLFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGQKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQTK
ITRSRQTFDRALRALPVTQHPRIWPLYLGFVRKLALPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAAVRLAALVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWQKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFDKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALHILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQVGIDDMKILEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDESGDEDDENQGPPEVQLEQKSVP
TAVFGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgctttcgcaagatggaaaatccgctgttctgtttgaggatgatgatctgccatatgaa
gaggagattatcagaaatccttattcggtcaagtgctggatgcgctacattgagttcaag
cagaacggacaaaaatccacccttaacatgatatatgagcgggctctgaaagagctgcct
ggcagctataaattgtggtacaactatctgagagagagacgaaaacaagtcaaaggaaaa
tgtatcactgaaccaggctatgaagaagtcaataattgccatgaaagggcattggttttc
atgcataagatgccaagaatatggcttgattactgccagttccttgtgtctcaaaccaag
atcacaagaagtcggcaaacatttgaccgtgccctcagagctctccccgttactcagcat
ccacgcatctggcctttgtatcttggctttgttcggaaactagctcttcctgagacagca
atccgggtgtatcgcagatatcttaagctttctccagagaatacagaggaatacatagac
tacttgcggtctgttggtcgtttggatgaagctgctgtacgattagcagctcttgtcaat
gatgaaagctttgtgtccaaagaaggaaagtctaactatcaactgtggcatgagctttgc
gacctgatctcccagaaccctgataaggtgacctctctgaacgtaggagccattattcga
ggaggcctcacccgcttcacggaccaacttggaaaactgtggtgctccttggctgactat
tatatcaggagtggccactttgagaaggcccgtgatgtatatgaggaggccattcttacc
gtggtaacagtaagggatttcacccaagtgtttgatagttatgctcagtttgaggaaagc
atgattgcagcaaaaatggagaccactgctgagatggggcaggatgaagatgatgatgta
gacttggaacttagactggcccgctttgagcagctaatagcccgtaggcccctcctattg
aacagtgtcctgttgcgacagaatcctcataatgtacatgagtggcaaaaacgagtaaaa
ctgtacgagggcaatccaagacagatcatcaacacatacactgaggcggtccagactgtg
gatcccatgaaggccacagggaagcctcattctctctgggtttcttttgctaaattctat
gaggaaaatgaacaactggatgatgccaggacaatttttgacaaagctaccaaggtaaac
tacaaacaagtggatgatcttgctgcagtgtggtgcgaatatggagagatggagctgcgt
catgagaactatgaacaggcactacatatattgaggaaagctacagccatcccctctaag
aaagctgagtactttgatgcatctgagccagtccagaacagagtctacaagtctttaaag
gtttggtccatgttggcagacttggaggagagccttggcactttccagtctacaaaagca
gtgtatgaccggattatagacctccgcattgccacaccacagattattatcaattatgcc
atgtttctcgaggagcacaactacttcgaggaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacctacctcactaagttcatt
gatcgttacgggggtaagaagctggagagagctagagatttatttgaacaagccctggat
ggctgtcctgcaaagtttgccaagaccatttacttgctgtacgctaaattggaagaggga
tatggattggctcgacatgccatggctgtctatgaaagagcaacgcaggcagtagaaact
gaggagagacatcacatgttcaatatctacatcaagagagcagctgaaatatatggagtt
acatataccagggcaatctaccagaaagctattgaggtccttcctgatgagcatgcgagg
gacatgtgtttgcggttttctgacatggagagtaaactgggggagattgatcgagccaga
gcaatctactcatactgttcccagatttgtgatcccagggttactgctcatttctggcag
acctggaaagaatttgagatacgtcatggaaatgaggacactattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaagtcaactttatgtcctctcagatg
ttgaaggccacaacaagctccacaggcactgtgtcggatcttgctccaggccaagtggga
attgatgacatgaagatattggagcagaaagctcagcagcttgctgcagaagctgagcag
gacaaacccaagcccaaagaaaagattctctttgtcaggagtgacacctctagaagtgag
ttggctgagctttctaaacaagccaatcctgatgaaattgatatagatgatgagtctggg
gatgaagatgatgaaaatcagggtccacctgaggtgcagcttgaacagaagagcgtccca
acagctgtctttggggggcttaaagatgactga
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