Antennarius striatus (striated frogfish): 137612735
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Entry
137612735 CDS
T10427
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
astr Antennarius striatus (striated frogfish)
Pathway
astr03030
DNA replication
astr03410
Base excision repair
astr03420
Nucleotide excision repair
astr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
astr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137612735 (lig1)
03410 Base excision repair
137612735 (lig1)
03420 Nucleotide excision repair
137612735 (lig1)
03430 Mismatch repair
137612735 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
astr03032
]
137612735 (lig1)
03400 DNA repair and recombination proteins [BR:
astr03400
]
137612735 (lig1)
Enzymes [BR:
astr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137612735 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
137612735 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
137612735 (lig1)
DNA replication proteins [BR:
astr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
137612735 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
137612735 (lig1)
DNA repair and recombination proteins [BR:
astr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
137612735 (lig1)
NER (nucleotide excision repair)
Other NER factors
137612735 (lig1)
MMR (mismatch excision repair)
Other MMR factors
137612735 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
137612735
NCBI-ProteinID:
XP_068197514
LinkDB
All DBs
Position
18:18443696..18483121
Genome browser
AA seq
1009 aa
AA seq
DB search
MQRSISSFFQPKNKDPKKNTDEPLKKPVKSPLKVQNGVQSIDSPVKKVAKRSRQILDSDD
DEVPVAKDQDVTKDHGEKETPDKTERKDDAFKVLPTPLSPPPAPTTPVTPTTPATPSSTT
SPGTPITPNSTSPTAILKRKTARKMFPKRKLDDRRSSSEGLKEEAEVKEEQGQQSKRARV
EGSFDGAGSLGEPMEEGAKEEKVEKAVTEANSPDELENKKKEYDEKTEEEEERVERKSAD
EKGKKAEGAVEKNGAEPKTDDEKGPAVAKNLAVEKDMQFGEESPKSQMEKGQKEAKEQKD
KEPAKKASISSFFAPRKAATTTKKPDRSDREKKTSTEKKTSTEESKDSKDESTSGQTDYN
PSGPNYHPVDHACWRKGQKVPYLAVARTFEKIEEDSGRLKNIETLSNLFRSVLLLSPEDL
LCCVYLCLNQIGPAYLGMELGIGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSR
SNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLA
GKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVLDAGKGMSAESRRAWIEEKSLILKQTY
CEMPNYDVLIPVLLKEGIEQLPNHCKLTPGVPLRPMLAHPTKGVSEVMKRFDEAAFTCEY
KYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKMKKDSVVSCVLDSEAVAWDR
EKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESFS
EVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKK
DYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDDNEEFQSVCKIGTGFKDEDLEQ
HYKFLKEHILPKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLADPEKG
ISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGDKADAEDYY
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatttcgtcattctttcagcccaagaacaaagatccgaagaaaaataca
gacgagccactgaaaaaacctgtcaaaagcccactgaaagtacagaatggtgtccaaagc
attgattcacctgttaagaaagttgccaaacgcagccgacagattctggacagtgacgac
gacgaggtcccggtggcgaaagaccaagacgtgaccaaagaccatggagagaaagaaacg
cctgataaaactgaaaggaaagatgatgcgtttaaggtgcttcccacccccttgtctcct
ccacctgccccaaccacccctgtaacccccaccactccggccaccccatcatctacgact
tcacccgggaccccgatcaccccgaactccacctcccctactgcgattcttaaacgcaag
accgcaaggaagatgtttccaaagaggaaactcgacgacaggaggagcagcagcgagggt
ctgaaagaggaggccgaggtcaaggaggagcagggtcagcaaagcaaacgagcccgtgtg
gaggggagcttcgacggtgcagggagcctcggcgaacccatggaggagggagcaaaggaa
gaaaaggttgaaaaggctgtgaccgaggctaacagcccagatgagttggagaacaagaag
aaagagtatgacgagaagaccgaggaggaggaggagcgagttgagagaaagagcgctgat
gagaaagggaaaaaagctgagggggcagtagagaaaaatggagcggagccgaagactgat
gatgagaaagggcctgctgttgccaagaacttggcggttgaaaaggacatgcaattcgga
gaggagagcccaaaaagtcaaatggaaaaagggcagaaagaagctaaagagcagaaagat
aaggagccggccaagaaagcctccatcagcagtttctttgctccaagaaaagctgcaaca
acgacaaagaagcccgaccggagtgacagagagaaaaagacgagtacagagaagaagact
tcaacggaggagagcaaagacagcaaagatgagtcaacatcaggacagactgactacaat
ccatccgggccaaactaccatcctgtggatcacgcctgctggaggaagggccaaaaagtg
ccgtacctggcagtggctcggacttttgagaagattgaagaggattctggcaggctgaaa
aacattgagacgctgtcgaacctgtttcgctctgtgctgctgctctctccagaggacctg
ctgtgctgtgtgtacctgtgtttgaaccagataggtcctgcctacctggggatggagctt
ggcatcggagagacggtgctcatgaaagctgttgctcaagcaactgggcgacaattggac
aaaatcaaggcagaggcgcaggagaaaggagatttgggactcgtagccgagagttcccgt
agcaaccagcgcatgatgttccaaccggccagtctgacagcagggggcgtgtttaggaaa
ttgaaggaaattgctagcatgagtgggaactcggccatgaataagaaaatagacatcatc
aaaggcctctttgtggcatgccgtttttccgaggcccgctacatcgtcaggtccctggct
ggaaagctgaggataggcttggctgagcagagcgtcctatcagcattaagccaggctgtt
tgcttgaccccccccggacaaggtttccctcccgctgtgcttgacgcggggaaggggatg
agcgcggagagcaggcgggcttggatcgaagagaagagtctcattctcaaacagacttac
tgcgagatgcccaattacgatgtcctcatccccgtactgctgaaagagggcatagagcag
ctacccaatcattgcaagctcactccaggggttccgctgagacccatgctggcccaccca
accaagggcgtcagcgaagtgatgaagaggttcgatgaagcagcgttcacctgcgagtac
aaatacgatggagagcgtgctcagattcacattctagagagtggtgaggttcgagtattc
agccgtaaccaggaagacaacaccagcaaataccccgatatcatctcacgcattcccaag
atgaagaaggactctgtggtgtcctgtgttttggactcggaggcggtggcctgggatcga
gagaagaaacagatccaacctttccaggtcctcaccacccggaagagaaaggacgtggac
gcctcagaaatcaaagtccaagtgtgtgtgtacgccttcgacctcctctatctgaacggc
gagtccctcgtgcgacagccattgtgtcggcgtcgggctctgctgaaggaaagcttctcc
gaggtcgagggagagtttgtgttcgcccgatctatcgactccgacaacacggacgccatt
gctgaattcctggaacagtctgtccgagattcctgtgagggcctaatggtgaagacactg
gagaaggatgccacctatgaaattgctaagcgctctcacaactggctgaagctgaagaag
gactatctggagggcgtgggcgacacggtggacctgtgtgtgatcggcgcctacttgggt
aaaggcaagaggacgggcacctacgggggcttcctgctggcctgctacgacgacgacaac
gaggagttccagtctgtgtgcaagatcgggacgggcttcaaggatgaagatctggagcag
cattataagttcttaaaggaacacattctacccaaaccccgtgcctactaccgtttcgac
caatcagcagagcccgatgtttggctggacgccgtgcaggtttgggaggtgaagtgcgcc
gacctgtcgctgtcacccgtctacaaggctgctatgggactggcggatccagaaaagggc
atttctctgaggttcccccgcttcctccggatcagggatgacaagaagccagaggacgcc
accaccggagctcagattgctgatttgtacaagaagcagcagcagattcagaatcaggga
gacaaagctgatgcggaggattattactga
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