Actinobacillus succinogenes: Asuc_0040
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Entry
Asuc_0040 CDS
T00558
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asu
Actinobacillus succinogenes
Pathway
asu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Asuc_0040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asu03021
]
Asuc_0040
03400 DNA repair and recombination proteins [BR:
asu03400
]
Asuc_0040
Enzymes [BR:
asu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Asuc_0040
Transcription machinery [BR:
asu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Asuc_0040
DNA repair and recombination proteins [BR:
asu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Asuc_0040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABR73421
UniProt:
A6VKC4
LinkDB
All DBs
Position
complement(48471..52730)
Genome browser
AA seq
1419 aa
AA seq
DB search
MKDLVNFLKAQSKTAEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLEKGQLLTEEQYLDAEERWADEFEAK
MGAEAIQSILRDMDLEHECEVLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDVIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGDPIIVPSQDVVLGIYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GRAELHSRVKIRITEYVKNAEGEFEPQTNLVDTTVGRAILWMIAPKGMPFNLFNQTLGKK
AISKLINECYRRLGMKESVMFADQIMYTGFAYAARSGSSVGIDDMVIPEKKYEIIAAAEQ
EVAEIQEQFQSGLVTVGERYNKVIDIWAAANERVAKVMMENLSTEEVINREGNPEKQSSF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGIVMSPLIEGGDEKVPLRELV
LGRVAAEDVLKPGTEEVLIPRNTLIDEQWCNIIDENSVDSIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNNGTIR
LANVKFVTNNEGKLVLTSRNTELTVIDAFGRTKEHYKLPYGTTLNKADGAEVTAGEIVAN
WDPHTMPVISEVAGFVKFVDIVDGLTVSRQTDELTGLSSILVQDVGERATAGKDLRPAIK
LVDAQGNDILIEGTDVAAQYFLPGKAIVTLDDGAEINVGDPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTDGGETYEEMIPKWRQLNVF
EGEMVQRGDLISDGAETPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQ
MLRKAIITNAYDSEFLEGEQVEVARIKIVNRKREAEGKPLVEFERELLGITKASLATESF
ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRAKNRHNALAA
EQAVKFSAADEAEIDAEFNMIADDPTSSLAEMLNMADEE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttagttaattttttaaaagcgcaatcaaaaactgccgaagattttgatgta
attaagattggtttggcttcaccggacatgattcgatcatggtcgttcggtgaagtgaaa
aaaccggaaaccattaactaccgtacctttaaacctgaacgagacggtcttttctgtgcg
cgtattttcgggccggtaaaagattacgaatgtttatgcggtaaatataaacgtttgaag
catcgtggcgtaatctgtgaaaaatgcggggttgaagtgacccaaaccaaagttcgtcgc
gaacgtatggggcatattgaattagcgtcaccggtggctcacatctggttcttaaaatcg
ctgccgtctcgtatcggtttattgttagacatgccgttgcgcgatattgaacgagtgctt
tatttcgaatcttatatcgtcattgaaccgggtatgactgatttggaaaaagggcagtta
ttaactgaagaacaatatttggatgccgaagaacgttgggcggatgaattcgaggcgaaa
atgggggcggaagctatccagtccattttacgcgatatggatttagaacacgaatgtgaa
gttttacgtgaagaattacaagaaaccaattctgaaaccaaacgtaaaaaaatcactaaa
cgtttgaaattattagaagcatttattcagtccggcaacaaaccggaatggatggtaatg
actgtattaccggtacttccgccggacttacgtccgttagttccgttggacggaggtcgt
ttcgccacttcggatttaaacgatttataccgccgtgtcatcaaccgtaacaaccgtttg
aaacgactattagatttagttgcgccggatattatcgtacgtaatgaaaaacgtatgctg
caagaatccgtggatgcgctgttggataacggtcgtcgcggtcgcgcgattacggggtcg
aatcgtcgtccgctgaaatctcttgcggatatgatcaaaggtaaacagggtcgtttccgc
caaaacttattgggtaaacgtgttgactattcaggccgttctgtaatcaccgtaggtccg
tacttgcatttacatcaatgcggtttgccgaaaaaaatggcactggaattattccgtccg
tttatttatgcgaaactagaaagccgcggttatgcgacaaccattaaagcggcgaagaaa
atggttgagcgtgaagatgttatcgtgtgggatatcttggctgaagttattcgcgaacat
ccgattttattaaaccgtgcgccgaccttgcaccgtttgggtattcaagcatttgagcca
attttaatcgaggggaaagcaatccagttgcatccgcttgtttgtgcggcgtttaatgcg
gacttcgacggtgaccagatggcggttcatgtaccgttgacgttagaagcgcagttagaa
gcccgcgctttgatgatgtcgaccaataatattttatcaccggcgaacggtgatccgatt
attgtgccgtcacaagatgtggtattgggtatttactatatgacccgtgataaagtgaac
ggtaagggtgagggtatgctgttacaggatcctcgcgaagcggaaaaagcttatcgtacc
ggtcgtgcggaattgcattcacgtgtaaaaatccgtattacggaatatgtgaaaaatgcg
gaaggagagtttgaaccgcaaactaacttagtggataccactgtcggtcgtgctatttta
tggatgatcgcgccgaaaggtatgccgtttaatttgttcaaccaaactcttggtaaaaaa
gccatctctaaattgatcaacgaatgttatcgtcgtttaggcatgaaagagagcgtaatg
tttgcggaccaaatcatgtataccggtttcgcgtatgcggcacgttcgggctcatccgtc
ggtatcgacgatatggtgattccggagaaaaaatacgaaattattgcggcagcggaacaa
gaagtagctgaaattcaagagcaattccaatcaggtttggtgactgtcggtgaacgttat
aacaaagtgatcgatatttgggcggcagctaacgaacgtgtagcgaaagtaatgatggaa
aatctttctacggaagaagtaatcaaccgtgaaggtaatccggaaaaacaatcttcattc
aacagtatctttatgatggcggattccggcgctcgtggttccgccgcacagattcgtcag
ctagcgggtatgcgcggtttgatggctcgaccggacggttcaattatcgaaacaccgatt
acggcgaacttccgtgaaggtttaaacgtattacagtactttatttcaactcacggtgcg
cgtaaaggtttggcggataccgcattaaaaacagcgaactccggttatttaacccgtcgt
ttggttgacgtcgcacaagacttagttattgtcgaagacgattgtggtacgcatgaaggc
atcgtgatgtctccattaatcgaaggcggcgatgaaaaagttccgctacgtgagctggta
ttaggtcgtgtagccgcggaagacgtgttaaaaccgggtacggaagaagtcctgattccg
cgtaatacgttgatcgacgaacaatggtgtaatattatcgatgaaaattcggtagacagc
attaaagtacgttccgtcgtaacctgtgataccgatttcggtgtgtgcgctaaatgttat
gggcgtgacttggcgcgcggtcatctgattaaccaaggcgaggccgtcggtgttatcgcg
gcacaatctatcggcgaaccgggtacacagttaaccatgcgtacgttccacatcggcggt
gcggcatcagcagcggcgaaagaatccagcgtacaggttaaaaacaacggtacaattcgt
ttggctaatgtaaaatttgtcaccaataacgaaggtaaactagtattaacttcgcgtaat
accgaattaaccgtaatcgatgctttcggtcgtaccaaagagcattacaaactgccttac
ggtaccaccttaaataaagcggacggcgctgaagtcacggctggcgaaatcgtagcaaac
tgggatccgcatactatgccggttatatcagaagtggccggtttcgtgaaatttgtcgat
attgtcgacggtttaaccgtaagtcgccaaactgatgaattaaccgggttatcttctatc
ttggtgcaggatgtaggggaacgagcaacggcaggtaaagacttacgtccggcaattaaa
ttggtggatgcgcaaggtaacgacattttaatcgaaggtaccgatgtcgcagcacaatac
ttcttaccgggcaaagctatcgttactttggacgacggtgcggaaatcaacgttggtgat
ccgctggctcgtatcccgcaggaatctgtggggactaaagatattaccggcggtttgccg
cgcgttgcggacttattcgaagcacgcaaaccgaaagagccggcaatcttggctgaaatt
tccggtatcgtatccttcggtaaagaaaccaaaggtaaacgtcgcttattaattacacca
accgatggcggtgaaacttacgaagaaatgattcctaaatggcgtcagcttaacgtgttt
gaaggcgaaatggtacaacgtggcgatttgatttctgatggtgcggaaacaccgcatgat
atcttacgcttacgtggtgtgcatgcagttactgagtatatcgtaaacgaagtgcaagaa
gtttaccgcttacaaggggttaaaattaacgataagcacatcgaagtgatcgttcgtcaa
atgttgcgtaaagccattatcacaaacgcttacgattccgaattcttagaaggcgagcaa
gtggaagtggcgcgtattaagatcgttaaccgtaaacgtgaagctgaaggcaaaccgctg
gtagaattcgaacgcgagttgcttggtattaccaaagcatcattggcaaccgagtcattt
atctcggcggcctcgttccaggaaactacccgcgtattaactgaagcggcggttgccggt
aaacgtgacgaattacgcggcttgaaagaaaacgtgattgtcggccgcttaattccggca
ggtaccggttttgcatatcatcaaaatcgtgcgaaaaaccgtcataatgcgttagcggcc
gaacaagccgtgaaattctccgcagcggatgaagcggaaattgacgcggaatttaatatg
atcgcggatgatccgacttccagtctggcagaaatgctgaatatggcggatgaagaataa
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