Actinobacillus succinogenes: Asuc_0557
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Entry
Asuc_0557 CDS
T00558
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asu
Actinobacillus succinogenes
Pathway
asu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Asuc_0557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asu03400
]
Asuc_0557
Enzymes [BR:
asu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Asuc_0557
DNA repair and recombination proteins [BR:
asu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Asuc_0557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SWI2_SNF2
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABR73932
UniProt:
A6VLT5
LinkDB
All DBs
Position
617785..621231
Genome browser
AA seq
1148 aa
AA seq
DB search
MTTKYFTLDIPTQSNDHKILGNVLAGADCLAIAEIAAQHKGLTVIVTQDSKSAVRLEKVL
REITATEICLFPDWETLPYDAFSPHQEIISARLSALFYLQQANRGILLLPVTTLMQRVCP
PSFLQQNVLLIKNGDRFNIERLRLQLENAGYRTVEQVLEPGEFAVRGSLLDLFPMGSPLP
FRLDFFDDEIDSIRTFDVETQRTLAEIPQINLLPAHEFPTDSKGIEFFRARFRATFGEIR
RDPEHIYQQVSKGTLVSGIEYWQPLFFEQMGTLFDYLPANSLLVESEQNAEQAIRFYADA
EQRFESRKVDPMRPLLPPETLWLRADELNRHLKQYSRMTFKTEKVRSSVRRKNLPLVPLP
PLQIQAQQKEPLQALRRFIESFDGKIVFSVETEGRRETLLDLLSPGKLKPKQIKRLEEAE
EQHISLWISSLDHGFILESQSAVKIAVICETELLGDRVQQRRRDKRKTVNPDALIRNLAE
LKIGQPVVHLEHGVGRYGGLVTLENGGVKAEYLLLTYANDAKLYVPVAGLHLISRYVGGN
EETAPLHKLGSDAWSKARRKAAEKIRDVAAELLDVYAQREAQKGFAFQYEREEFQAFSAT
FPFEETFDQALAINAVISDMCQPKAMDRLICGDVGFGKTEVAMRAAFLAVMNHKQVAVLV
PTTLLAQQHYENFRDRFANLPVNVEVLSRFKTAKEQKRVLADLADGKVDILIGTHKLIQS
DVKFHDLGLLIIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSII
STPPARRLTIKTFVRQQDDLTVREAILREILRGGQVYYLHNDVASIENCAEKLTALVPEA
RVTVGHGQMRERELERVMTDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQL
HQLRGRVGRSHHQAYAYLLTPPPKLMTKDALKRLEALESLDNLGAGFVLATHDLEIRGAG
ELLGSEQSGQIESIGFSLYMELLEAAVTAMKEGREPSLDELTQQQVEIDLRVSALLPEDY
LGDVNMRLSFYKRIAGAENKTALDELKVELIDRFGLLPEAAQNLMRIAELRTLAKQLKII
KIDGTATGGFIEFNPTADIEPMKFLNLIQQQPAVFKFDGPTKFRFSHNLEQPKVRLEFVL
NLLNSLSD
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgaaatattttacgcttgatattcctactcaatcgaatgatcacaaaattctc
ggcaatgtactggcgggggcggattgtctggctattgccgaaatcgccgcacagcacaag
gggcttaccgtcatcgtcacccaagacagtaaaagtgcggtgcgtttagagaaagttttg
cgtgaaattacggcaaccgaaatttgtcttttccccgattgggaaaccctgccttacgac
gcgttttctcctcatcaggagattatttccgcccgtctgagtgcgttattttatctgcaa
caggcgaatcggggtattctgctgttgccggttaccaccctaatgcaacgcgtttgcccg
ccgtcatttttgcagcagaatgtgctactgattaaaaacggtgaccgtttcaatatcgaa
cgtctgcgtttgcaactggaaaatgcaggctatcgcacggtggaacaagtgttggaaccc
ggtgaatttgcggtgcgcggatcattgttagatcttttccccatggggagtccgttgccg
ttccgtttggatttctttgacgatgaaattgattctatccgcacttttgatgtggaaacc
cagcgtactttagcggaaatccctcaaatcaatttgttgcctgcccatgaatttccgacg
gacagcaaaggtattgaatttttccgtgcccgttttcgcgcgaccttcggtgaaatccga
cgggatccggaacatatttatcaacaggtttcgaaaggtacgttggtatcgggaatcgaa
tactggcagccgttgttttttgagcaaatgggtacattgtttgattatctgccggcgaac
agtttactggtggagtcggaacaaaacgcggaacaggcgatccgtttttatgcggatgcc
gaacaacgttttgaaagccgtaaggtggatcctatgcgcccgcttctgccgccggaaacc
ctgtggttacgggcggacgaacttaaccgccatctgaaacaatattcccgtatgacgttt
aaaacggaaaaagtgcgctcgtccgtgcgccggaaaaatctcccgcttgtccctctgccc
ccgctgcaaattcaggctcagcaaaaagaaccgttgcaggcgttacgccgatttatcgaa
tcctttgacggtaaaatcgtgttttccgtggaaacggaagggagacgggaaacccttttg
gatttgctttcgcccggcaagcttaagccgaaacaaatcaaacggttagaggaggcggaa
gagcagcatatcagtctatggattagttctcttgatcacggttttattttggaatctcaa
agtgcggttaaaatagccgttatttgtgaaacggaattattgggtgacagagtacagcag
cggcgtcgcgataaacgcaaaaccgtaaatccggatgccttaatccgtaatctcgccgaa
ctgaaaatcggacaaccggtagttcatctcgaacatggcgtcgggcgttacggcggactg
gtaacgttggaaaacggcggtgttaaagcggaatatttgctattaacttatgccaatgac
gccaaactttacgtgcccgtcgccggtttgcatttaatcagccgttatgtgggcggtaac
gaagaaaccgcgccgttgcacaaattaggcagcgatgcttggtcaaaagcacgccgcaag
gcggctgagaaaattcgcgatgtagcggcggaattattggatgtttatgcccaacgggaa
gcgcagaaaggtttcgctttccaatatgagcgcgaagaattccaggcttttagcgctacg
tttccgtttgaagaaacttttgatcaggcgttggcaattaatgccgtgatttccgatatg
tgtcagccgaaagcgatggatcgcttaatttgcggggatgtgggattcggtaaaaccgaa
gtcgccatgcgcgccgcatttttagcggtgatgaatcacaaacaggttgccgtgctggta
ccgacgactttgctggcacagcaacattatgaaaatttccgcgatcgttttgccaatctt
cccgttaacgtcgaagttctgtcgcgttttaaaacggctaaagaacagaaaagagtatta
gcggatcttgccgacggcaaagtggatattttgatcggtacgcataaactgattcaatcc
gatgtcaaattccacgatttaggtttgttgattattgatgaagaacaccgtttcggcgtt
cgacaaaaagaacgaatcaaacaactgcgcgccaatatcgatattctcacgttaactgcc
acgccgattccgcgtacgctgaatatggcgatgaacggaattcgtgatttatccattatt
tctacgccgccggcgcgtcggttaaccattaaaacctttgtgcgtcagcaggacgatctc
accgttcgcgaagcgattttgcgcgaaattttgcggggcggacaggtttattatctgcat
aatgatgtggcaagtattgaaaattgtgcggaaaaattgaccgcacttgtgccggaagca
cgcgttaccgtagggcacggacaaatgcgggaacgggaattggaacgggtgatgacggat
ttttatcatcagcgtttcaatgtgctggtctgttctaccattatcgaaaccggcattgat
gtgcctaccgccaataccattattatcgaacgggcggataatttcggtttggctcaatta
caccaattacgcggacgggtagggcgttctcatcatcaggcatacgcctatttgctgacg
ccgccgccgaaattgatgaccaaagacgcgctgaaacgtttggaagcgttggaaagtctg
gataatctcggggccggcttcgttttggctacgcatgatttagaaatccgcggtgcgggc
gaattactgggttccgagcagagcgggcagattgaaagtatcggtttctcattatacatg
gaattattggaagccgccgtgacggcgatgaaagaaggacgcgaacctagtctggacgaa
ctcacgcaacagcaggtagaaattgatttacgggtgtcggcgttattaccggaagattat
ctgggcgatgtcaatatgcgcttgtccttttataaacgcattgccggggcggaaaataaa
acggctttggacgagttaaaagtagaattaatcgatcgtttcggtttgttgccggaggcg
gcccaaaatctgatgcggattgcggaattacgcactttggcaaaacagcttaaaattatc
aaaattgacggcacggcaaccggcggctttattgaatttaacccgacggcggatattgaa
ccgatgaaattcctgaatcttattcagcaacaaccggcagtgtttaaatttgacggaccg
accaaattccgtttttcccacaatttagaacaaccgaaagtacggttggaatttgtatta
aatttattgaattcattatcggattag
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