Actinobacillus succinogenes: Asuc_1838
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Entry
Asuc_1838 CDS
T00558
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asu
Actinobacillus succinogenes
Pathway
asu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asuc_1838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asu03019
]
Asuc_1838
03009 Ribosome biogenesis [BR:
asu03009
]
Asuc_1838
Enzymes [BR:
asu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Asuc_1838
Messenger RNA biogenesis [BR:
asu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Asuc_1838
Ribosome biogenesis [BR:
asu03009
]
Prokaryotic type
rRNA processing factors
Asuc_1838
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
RecD_N
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABR75189
UniProt:
A6VQE2
LinkDB
All DBs
Position
complement(2015509..2018397)
Genome browser
AA seq
962 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQHLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPADYVYNGRPNIKDVIKEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERIELKEALSSLDVPEGVGLIVRTAGVGKSSEEL
QWDLKVLLHHWEAIKQVSENRPAPFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKA
KAHIKLVRPDFINRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMREAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSSHICPRCQGTGKVRDNESLSL
SILRLIEEEALKENSKQVQCIVPVQIASYLLNEKRKAIRSIEKRHNVDIVVAPNEAMETP
HFSVFRLRDGEEANVLSYHLPKLHEVQEDVFVAEESLISRNIETAAVTAENMAESAVLSM
TIPEAAPVIEAKKEAESSLFARIVAAIKKLFTTAPEAEKVEEQPVVTRNNRNNRRERNNE
RNNERRNSRRSRAERNTARNNDTAAEKPETPSRNERSNERNNRRNARRAALTDETSANAG
TAEAVETSEEKSPAPRQPRERRERRDLRKKVRVSNETVEQQAVEEVSAVAEETVTEQPSS
ESPRRERSERNSRRMPRHLRTNNSRRRRNEVSSMPLFAAVASPELASGKVWIDSNTTSQK
TKESNFLSVDELLEQQTQNDEVEVSTPASSIVEKAENNAQPLGLVSQPANEAVEKKVQES
LERLNEEQRVLEQQAKASSVAEAAVEKENVIPEKKVNEPEISVKNGQKFDRTYRFNGRLG
TISAVRHTKADMTLAKADNEVNVPFDIVEWKDSRYYFHGKGSAGHHSAISHVFSEPTKAE
AK
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcgactcaaaaagaagagttgcgtgtagcgttggtcgac
ggccagcatttatttgatttggatatcgaaagtccgggtcatgagcagaaaaaagccaat
atctacaaaggccgtattacccgcgtagaaccgagtcttgaggctgcattcgtagactac
ggcgccgaacgtcacggttttctgccgttaaaagaaattgcccgcgaatattttccggct
gattacgtttataacggacgcccgaacatcaaagatgtgattaaagaggggcaggaagtc
attgttcaggtgaacaaagaagaacgcggcaataaaggtgcggcgttaacgacttttgtt
tccctggccggtagttatttggtcattatgccgaataatcctcgtgcgggcgggatttcc
cgtcgtatcgaaggcgacgaacgtattgagttaaaagaagcgttaagttcgttagacgta
ccggaaggcgtgggtttaatcgttcgtacggcaggcgtgggtaaatcatcggaagaattg
cagtgggacttgaaagtgttactgcatcactgggaagccatcaaacaggtttcggaaaac
cgtccggcaccgttcctgattcatcaggaaagtgatgttattgtccgtgctatccgcgat
tatttgcggcgcgacatcggcgaaattttagtggacagcccgaaaatttacgaaaaagcg
aaagcacatatcaaacttgtgcgtccggatttcattaaccgaattaagctttatcagggt
gaagtacctttattcagccattatcaaatcgaatctcagattgaatcggcgttccagcgg
gaagttcgtttgccttccggcggttctatcgtaattgacgccaccgaagcgttgattgcc
atcgatattaattccgcacgctcaacccgcggcggcgatattgaagaaaccgcattaaat
accaaccttgaagcggcggatgaaatcgcccgtcagctacgtttacgcgacttaggcggt
ttagtggtgattgatttcatcgatatgacgccggttcgccaccaacgagaggtggaaaat
cgtatgcgtgaagcggttcgtcaggatagagcccgtattcagattagccgtatttcccgt
ttcggtttgctggaaatgtcacgccagcgtttaagtccgtcgttaggcgaatcttccagc
catatttgtccgcgttgccaaggaacgggtaaagtacgcgataacgaaagtttatcactt
tctattttacgtttgattgaagaagaggcgctgaaagaaaacagtaaacaggtacaatgc
atcgtaccggttcaaatcgcttcttacttgctgaatgagaaacgtaaggctattcgcagc
attgaaaaacgtcataatgtagatattgtagtcgcgccgaatgaagcgatggaaacgcct
catttcagcgttttccgtttacgtgacggcgaagaagcgaatgttttaagttatcacctg
ccaaaattacatgaagtgcaagaagatgtgtttgttgcggaagaaagtctgatttcccgc
aatatcgaaacggcggcggtaacggcagaaaatatggcggaaagcgcggtcttgtctatg
actattcccgaagccgcgccggttatcgaagctaaaaaagaagcggaatcgtctttattt
gcgcgcattgttgcggccattaagaagttatttacgacggcgccggaagcggaaaaagtc
gaagaacaaccggttgtcacccgtaataaccgtaataatcgtcgtgaacgtaataatgaa
cgcaataacgaacgccgtaatagtcgtcgttcacgagcggaacgtaatacggcgagaaat
aacgataccgcagcggaaaagccggaaactccgtcacgcaacgagcgttcgaatgaacgt
aataatcgacgtaacgcccgccgtgccgctttgacggatgagacgtcggcaaatgcggga
acagcggaagccgttgagacgtccgaagaaaaatcacctgcgccccgtcaaccgagagaa
cgccgcgaacgtcgcgatttgcgtaaaaaagtccgtgtcagcaatgaaacggtagagcaa
caggcggtcgaagaggtttctgccgtagcggaagaaacggtaacggaacagccgtcttca
gaatcgccgcgtcgtgaacgcagcgaacgtaattcccgtcgaatgccgcgccatttacgt
accaataattcacgtcgtcgccgtaacgaggtctcatccatgccgttgttcgccgccgtg
gcttcgccggaattggcaagcggtaaagtctggattgattcgaatacgacatcgcaaaaa
acgaaagaatcgaatttcctatcggtagatgaattgttggaacaacaaacgcaaaatgat
gaagtagaagtcagtacgccggcttcctctatcgtagaaaaagcggaaaataatgcgcag
cctttaggcttggtcagccaacctgcaaatgaagcggtggagaaaaaagtacaggaatct
cttgagcgtttgaatgaggaacagcgtgttctcgaacagcaagcgaaagcttcctccgtt
gctgaagcggcggtagagaaagaaaacgttattcccgagaaaaaggtgaatgaaccggaa
atctccgtgaaaaacggacagaaatttgaccgcacttaccgttttaacggtcggttaggt
acgatttccgccgtacggcacaccaaagcggatatgactttggcgaaggccgataatgaa
gtgaatgttccgtttgacattgtggaatggaaagacagccgttactatttccacggtaaa
ggctcggcgggtcatcacagtgccatcagccatgtgttcagcgaacccacgaaggctgag
gctaagtag
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