Actinobacillus succinogenes: Asuc_2063
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Entry
Asuc_2063 CDS
T00558
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asu
Actinobacillus succinogenes
Pathway
asu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asuc_2063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asu03019
]
Asuc_2063
03016 Transfer RNA biogenesis [BR:
asu03016
]
Asuc_2063
Enzymes [BR:
asu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Asuc_2063
Messenger RNA biogenesis [BR:
asu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Asuc_2063
Transfer RNA biogenesis [BR:
asu03016
]
Prokaryotic type
tRNA degradation factors
Asuc_2063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_RNR_1st
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
ABR75409
UniProt:
A6VR12
LinkDB
All DBs
Position
2269417..2271795
Genome browser
AA seq
792 aa
AA seq
DB search
MAGKKTVKKMTALTDSIHLDPNYQKEQAKYENPIPSRDFILQIIREQNQPVSREELLKIF
AIKDDERTEAIRRRLRAMENDGQLVFTKRKRYALPEKLDLLKGTVIGHRDGYGFLQIEGR
TDKKDLFIPNAQMQRVMHGDFVLAQPTALDRKGRQEVRIVRVLENRKKQIVGRFFLEEGI
GYVVPDDSRISRDILVPNEDRKGARMGQVVVVELKPRTANLSQPVGAIIEILGDNMAKGM
EVEIALRNYDIPHVFPPAVEKYVKKFSEEVPEQAKAGRVNLCDLPLVTIDSEDARDFDDA
VYCRKEKNGWRLWVAIADVSYYVRLRTALDSEARNRGNSVYFPNRVVPMLPEILSNGLCS
LNPQVDRLCMVCEMQIDEKGLLKAYQFYEAVMNSHARLTYTKVAKILDGDEELRQRYAAL
VPHIKELHAMYKTLLNARHKRGAIDFETIESKFIFNEMGRIERIEAVERNDAHKIIEECM
ILANISAANFMERHEEPALYRIHAGPSEEKLTAFRTFLAELGLSLGGGLKPNTNDYAELL
NQVKQRPDAELIQTMLLRSLSQAMYEPDNIGHFGLALDEYAHFTSPIRRYPDLTLHRGIK
YLLAKAKGSSRRTTESGGYHYNTDEMAELGEHCSMTERRADDATREVADWLKCEYMQDHI
GEEFDGIISSVTGFGFFVRLDDLFIDGLVHVSTLDNDYYQYDAAGQRLIGENSGMLYRLG
DKVRVRVEAANLENRQVDFSLVAGERKPRRPGKTAKTRAKQTALSAPKNKGKPKKEKSAV
KKAKSAGKTRKK
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaaaaaaacagtaaaaaaaatgaccgcacttacggattccattcatcttgat
ccgaattatcaaaaagagcaggcgaaatatgaaaatcctattccgagccgggattttatt
ctgcaaatcattcgcgaacagaatcaacccgtgagtcgcgaagaactgttgaaaattttc
gctattaaagacgatgaacgcaccgaagcgatacgtcgccgtttacgtgcgatggaaaac
gacggacagctggtatttaccaagcggaaacgttatgcgttgccggaaaaactggattta
ctcaaaggaacggtaatcggacaccgtgacggttacggtttcttacaaatcgaagggcgg
acggacaaaaaagatttgtttattcccaacgcccaaatgcagcgtgtcatgcacggcgat
tttgtgcttgcccagcctaccgcactggatcgaaaaggccgtcaggaagtgcgtatcgta
cgcgtactggaaaaccgcaaaaaacaaattgtcggtcgttttttcctggaagaaggtatc
ggttatgtggtgccggacgacagccgtatttcacgcgatattctggtaccgaacgaagat
cgcaaaggtgcgcgcatgggacaggttgtagtggtggaactgaaaccgcgcaccgctaat
ttaagccagcccgtaggcgcaattatcgaaattctgggcgataacatggcgaaaggcatg
gaagtggaaatcgcgttacgtaactacgatattcctcacgtattcccgcctgcggttgaa
aaatacgttaaaaaattcagcgaggaagtaccggagcaagcgaaagcgggacgcgttaat
ttatgcgatctgccgttagtcaccattgacagcgaagacgctcgcgattttgacgacgcc
gtatattgccgtaaagaaaaaaacggctggcgtttatgggtggccattgccgacgtcagt
tattacgtgcgtttacgcaccgccttggacagcgaagcgcgtaaccgcggaaactcggtt
tacttcccgaaccgtgtcgtgccgatgttgccggaaattttatccaacggattgtgttcc
cttaatccgcaggtggatcgcctgtgcatggtatgcgaaatgcaaattgatgaaaagggt
ttactgaaagcttaccaattctatgaagcggtaatgaattcccacgcacgcctgacctat
accaaagtggcgaaaattttagacggcgacgaagaattgcgccaacgttatgctgcactg
gttccgcacatcaaagaattgcacgccatgtacaagactttgctgaacgcccgtcataaa
cggggagctattgatttcgaaaccatcgaaagcaaatttattttcaatgagatgggacga
atcgagcgtatcgaagcggtggaacgcaacgacgcccataaaatcatcgaagaatgtatg
attttagccaatatttctgcggcgaatttcatggaacgccatgaagaaccggcactgtac
cgcattcacgccggcccgagcgaagaaaaactcacggcgttccgtacctttctggccgaa
ctgggcttatctttgggcggcgggttaaaaccgaacaccaatgattacgcagaattgctg
aatcaagtgaagcaacgtcccgacgccgagctgattcaaaccatgttactgcgttctctc
agccaggccatgtacgaaccggacaatatcggacacttcgggctggcgctggacgaatac
gcccactttacttcgccgattcgtcggtatccggatttaaccctgcatcgcggcattaaa
tatctgctcgccaaagccaagggcagcagtcgacgaaccacggaatccggcggttatcat
tacaatacggacgaaatggcggaactgggcgaacattgctccatgacggaacgtcgcgcc
gacgacgccacgcgggaagtcgccgactggctgaaatgcgaatatatgcaggatcatatc
ggcgaagaattcgacggcattatatcgtccgtcaccggtttcggtttcttcgtgcgcttg
gatgacctgtttattgacggcttagtgcacgtttccacattggataacgattattatcaa
tatgacgcggcgggacaacgattaatcggcgaaaacagcggtatgctctatcggctgggc
gataaagttcgcgtgcgggtggaagcggcgaatctggaaaatcgtcaggtggatttctcc
ttagttgccggcgaacgcaaaccgcgtcgtccgggaaaaacggcaaaaacccgggcaaaa
cagaccgcactttccgcaccgaaaaacaaaggaaaaccgaaaaaagaaaaaagtgcggtt
aaaaaagcgaagagtgcgggaaaaacaagaaaaaaataa
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