Armigeres subalbatus: 134212197
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Entry
134212197 CDS
T09975
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
asua
Armigeres subalbatus
Pathway
asua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134212197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asua03019
]
134212197
03041 Spliceosome [BR:
asua03041
]
134212197
03009 Ribosome biogenesis [BR:
asua03009
]
134212197
03016 Transfer RNA biogenesis [BR:
asua03016
]
134212197
Enzymes [BR:
asua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134212197
Messenger RNA biogenesis [BR:
asua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134212197
Spliceosome [BR:
asua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134212197
Complex C
U4/U6.U5 tri-SnRNP related factors
134212197
Ribosome biogenesis [BR:
asua03009
]
Eukaryotic type
Pre-60S particles
Helicases
134212197
Transfer RNA biogenesis [BR:
asua03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134212197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
134212197
NCBI-ProteinID:
XP_062545821
LinkDB
All DBs
Position
2:266938799..266957315
Genome browser
AA seq
1036 aa
AA seq
DB search
MAQLDDLFDLFEAENDEDDAGNVPIVVEQSGKSESQREDSPAPVTKDEPAGTKRELEDDM
DEDVEVVESNKRAKVESLLDDINLDNIESRIKVHTIQSPEACTHEVAVYPEHKYMPLVPP
TGKAAKEYPFVLDPFQKEAILCIENQQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYT
TPIKALSNQKYREFHEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGW
VIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHIHKQPCHVVY
TDYRPTPLQHYLFPVGGDGIHLVVDEKGQFKEDNFNTAMAVLQNAGEAAKGDQKGKKGGL
KATNSGETNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMSKLDFNSTTEKKLVDEVF
NNAMDVLSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATET
FAMGLNMPARTVLFTGPRKFDGKDFRWVTSGEYIQMSGRAGRRGLDDKGIVILMIDEAVS
PAVGKEIVQGKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPEIYKK
VQVKQKELEGVHIKDEQSIVSYHHVRDQLDTLGKQFRDYITRPTYLVPFLQPGRMIKIQS
DAGEFEWGIIVNFKKETVDAKANPLKAETKVIIDVLLHVDDGFEKEGVPKPCPANKRGSV
EVVPVLHTLVHRVSSLRVYYPNDLRPADNRRSVLKTINEVKKRFPEGPPLLNPINDMHIK
EKDFQTIVDMIDKFEKRLFSHPLHDSPDLDKVYTKYMEKLELERQLKQEKNAFREAKSLL
HMDELKHRKRVLRRLGYCTTADVIEFKGRVACELSCADELLLTEMIFNGTFTNLTTAQAC
SLLSCFVCDEKSAEVPAATEELSGPLRQMQDLARRIAKVSNECKVDLDEERYVESFKPFL
MDVVLAWCKGSSFLQLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNSDLENKFSEA
IRLLKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcccaattggacgatctgttcgatttgtttgaagccgagaacgacgaagacgacgca
ggcaacgttccgattgtggtggaacaaagcggcaaatccgaatcgcagcgggaggattca
cctgcaccggttacgaaggatgaaccagctgggaccaagcgcgaattggaggacgacatg
gatgaagatgtcgaggtagtggagtccaataaacgggcaaaggtggaatcccttctggat
gatattaatttggacaacattgaatctcgcatcaaagtgcataccattcaatcgccagag
gcttgtacccacgaggtagctgtttaccccgaacacaagtacatgcctctggttccacca
accggaaaggcagccaaagagtacccattcgtgctcgatccgttccaaaaggaggccatc
ctgtgcatcgagaaccaacagtcggttctggtatcggcacacacgtcggcgggaaagacg
gttgtggcggagtacgccattgccaaatcgttggctgccaagcagcgggtcatctatacc
acgcccatcaaggccctgtccaaccagaagtatcgtgaatttcacgaagagtttaaggac
gttggtttggttaccggagatgtgacgatcaatccttccgcttcctgcctgatcatgact
acggaaattttgaggaacatgctgtaccgtgggtctgaaattatgcgcgaagttggttgg
gtgattttcgacgaaatccattatatgagagataaagagcgtggagtggtatgggaggaa
acgcttatcctacttccggataacgtgcattacgtgtttctctcggctactattcccaat
gctcgtcagtttgccgagtgggtttgccatattcataagcaaccttgtcacgtagtttac
acggattatcgtccgacgccactgcaacactatctgttcccagtaggaggggacggtatc
catttggtagtggacgaaaagggtcaattcaaggaggacaactttaacactgcaatggca
gtgctgcaaaatgctggggaagccgctaaaggggaccaaaagggcaagaaaggcggactg
aaggcaaccaattcgggcgagacgaatattttcaaaattgttaaaatgatcatggaaagg
aattttgctccggtaattattttctcattcagtaaaaaggattgcgaaatttacgcgatg
cagatgtcgaagttggatttcaattcgaccacggagaaaaagttggttgacgaggtgttc
aacaatgcaatggatgtgctgagcgaagaggatcggcaattaccccaggtggaaaacgta
cttccattgttgcgccgaggaatcggaatccatcacggagggctgttgccaattctgaag
gaaaccattgaaatcctgttcggcgaaggtttgatcaaagctctgttcgccacagagacg
ttcgccatgggcctgaacatgccggcccgtacggtgcttttcacgggtccgcgaaagttc
gacggtaaagatttccgctgggttacatccggagagtacattcagatgtcgggacgtgcc
ggtcgccgtgggttggatgataaaggtatcgtaattttaatgattgacgaagcggtttca
ccggcagtggggaaggagatcgtacagggcaaaccggatcccatcaattctgcgttccat
ttgacttataacatggtattgaatctgcttagagtagaggaaatcaatccggagtatatg
ttggagcgatcgtttttccaatttcaaaatcagtcgtcaattccagagatttataaaaaa
gtgcaggtaaagcagaaggaactcgaaggcgtccacataaaggatgaacaatcgatagta
tcctatcaccacgtcagagatcaattagacactctaggaaaacagttcagggattacata
acaagaccaacctatttggtacctttcctccagccaggaagaatgataaaaattcaatct
gatgctggtgaatttgagtggggtatcattgtcaatttcaaaaaagaaactgttgacgcc
aaagccaacccactaaaagctgaaacaaaagttatcattgacgttcttttgcacgtcgat
gatggctttgagaaggaaggtgtccctaagccatgccctgcgaacaaacgtggttctgtc
gaggtcgtacctgttctgcataccctcgtacatcgggtaagctcgctacgtgtctactat
cctaacgaccttcgaccagctgacaatcgccgatcagttctgaaaacaatcaacgaagtc
aagaaacggttccctgaagggccaccattgctgaatccaatcaacgatatgcacatcaaa
gagaaagatttccaaaccatcgtagacatgattgataaatttgaaaaacgcctcttttcc
catccattgcatgattcgccggatctggataaggtctacacgaagtacatggagaaactg
gagttggagcgtcaacttaagcaggagaaaaacgccttccgggaagctaagagcctactt
cacatggacgaactgaaacatcggaaacgtgtgctccgtcgtttaggctactgcacgact
gctgatgtcatcgagttcaagggacgcgtagcctgcgaactgagctgtgccgatgaactg
ctgcttacggagatgatttttaacggaaccttcacaaatctaaccaccgcacaggcatgc
tcattgctttcgtgcttcgtttgcgatgaaaaaagtgccgaagtgccggctgctaccgaa
gaactgtccggaccacttcgacagatgcaggatctcgctcggcgaatagccaaagtttca
aacgaatgcaaagtagatttggacgaagaacgatacgtagaatcgttcaaaccgttcctg
atggacgtggtgctggcatggtgcaagggatcttcgttcttacagctttgcaaaatgacg
gatattttcgaaggatccatcatccgctgtatgaggcgtctggaggaactgcttcgtcaa
atggtgcaagcatccaaaacgatcggaaactctgatttggaaaacaaattctcggaagcg
atacgacttcttaaaagggacatagtgtttgctgcttcgctgtatttgtaa
DBGET
integrated database retrieval system
