Armigeres subalbatus: 134224351
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Entry
134224351 CDS
T09975
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
asua
Armigeres subalbatus
Pathway
asua03013
Nucleocytoplasmic transport
asua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134224351
03015 mRNA surveillance pathway
134224351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asua03019
]
134224351
Enzymes [BR:
asua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134224351
5.6.2.5 RNA 5'-3' helicase
134224351
Messenger RNA biogenesis [BR:
asua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134224351
mRNA cycle factors
Common to processing body (P body) and stress granule
134224351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
ATPase
NPHP3_N
AAA_22
nSTAND3
AAA_16
AAA_32
SRP54
TetR_C_28
AAA_10
AAA_5
AAA
Motif
Other DBs
NCBI-GeneID:
134224351
NCBI-ProteinID:
XP_062559662
LinkDB
All DBs
Position
3:112051326..112063209
Genome browser
AA seq
1121 aa
AA seq
DB search
MSVDTYDGVVSSQTLTFLDTEENDLIGADTQGTDYDFRDFTIPSQSQTLASQFDHLGGGA
ASQLNGFGRRLGASDQVKVAGITSAIGELQFEEDEDDPVVQNRELPPHACRYCGIHEPST
VVMCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHGDGPLGETVLECYSCGVKNVFV
LGFIPAKADSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKVPNEQEQLR
ARQVSAAQINKLEELWKENVDATFQDLEKPGIDKEPAQVLFRYVDGYQYQNIFGPLVKLE
ADHDKRLKESQTQENIEIRWDTGLNRKTIAYFTLAKNDGDMKLMHGDELRLRYTGELHKP
WSCVGHVIKVPDNYGEDVGLELKHNHQAPIECTSNFAVDFIWKGTSFDRMQMALRKFAVD
DNSVSNYIYSRLLGHGRPDGSDDVTFRVNNLPKHFSAPNLPDLNRSQVYAVKHALQRPLS
LIQGPPGTGKTVTSATIVYQLVRLNGGPVLVCAPSNTAVDQLTEKIHRTSLKVVRVCAKS
REAIESPVSFLALHNQIRNMEQNSDLKKLQQLKDETGELSSSDEKRYRTLKKQAERELLE
AADVICCTCVGAGDPRLQRIKFSSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAE
ERKLKVDFPWPSPDTPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGVKPDQ
IGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQG
IGFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYKDKKVLVEGSLNNLKES
MIQFTKPKKIVNTLNPGSHFMNNIMYDAKEAGYFERGHGSGFSGSSFGNPGPIGSMMNGP
RNQPLDMFSRTHDPISYISPDRVQAAMNNVPIPVGMFMNMPNVQPRYFQQQQAVQAAKQA
RRTKPGVIGSKPKPRPIGPPSSQINTSGAIGTGSLTQGMSQNMSQPGFSLSQQPDFSQDY
MAEYQSQVDGLLSQESTFGPSQSAVERLAFDLPPNQFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggatacttacgatggagtggtcagttcccaaacgttgacgttccttgatacg
gaagaaaatgacctcatcggagcggatacgcagggaacggattatgatttccgtgacttt
accattccgtcgcagagccaaacactggcctcgcagtttgaccatttgggtggtggagca
gcaagccagctgaacggatttggtcgtcgtctaggagcctcggaccaggtgaaagtagcc
ggcataacatcggccatcggtgagttgcagttcgaggaagacgaagatgatccggtggtg
cagaatcgcgagttgccgccgcatgcctgtcgctattgcggcatccacgaacccagcacg
gtcgtcatgtgcaacatctgcaagaagtggttctgcaatggacgcggcagcacatcggga
tcgcacatcgtgaatcacctggtaagggcgaagcatcgcgaggtaacgctgcatggtgat
ggtcccctcggggagacggttctcgaatgttactcgtgtggcgtgaagaatgtgttcgtg
ttgggattcattccggccaaggctgattcggttgtggttcttctgtgcagacaaccttgt
gctgctcaaaattccatcaaggacatgaactgggaccaagaacagtggaagccgttgatc
gctgatcgctgttttctgttctggttggttaaggttccgaatgagcaggaacagctgcga
gctagacaggtttcggctgcccagatcaacaagttggaagaactgtggaaggaaaatgtg
gatgcaacgttccaggatttggaaaagccgggaatcgataaggagccggcccaggttttg
ttccgctatgtagatggatatcaatatcagaacatttttggaccccttgtgaagctggaa
gcggaccacgacaagcgcttgaaggaaagtcagacgcaggaaaatatagaaattcgttgg
gacacgggattgaatagaaagacaattgcttattttactcttgctaaaaacgatggcgat
atgaagctgatgcacggagacgaactacgtttgagatacaccggggagttgcataagccg
tggagctgtgttggtcatgttatcaaggtaccggacaattacggggaagatgttggtttg
gagttgaagcacaatcatcaggctccaattgagtgcacttccaattttgcggttgatttc
atctggaagggaacatcttttgaccgaatgcaaatggcgttgcgtaaatttgccgtagat
gataacagcgtttcgaactatatctattcaagattgctcggccatggtagaccggatgga
tcggatgatgtcacatttagagttaacaatttgccgaagcactttagcgcaccgaaccta
ccggatctgaatcgctctcaggtgtacgcagtgaagcatgcccttcaacgccctttaagt
ttgattcaaggaccgcctggaactggtaaaacggtcacttctgcaacgattgtctaccag
ttggttcgtttgaatggtggaccggttttggtgtgtgctccaagtaacacagcagttgac
caactgacagagaaaatccatcgtaccagtctgaaggtagttagagtctgtgcaaagtct
cgtgaagctatcgaatcacccgtcagttttttggcgctgcataatcagatccgcaatatg
gaacagaatagtgatctgaagaagttgcaacagctgaaggacgagactggagagctgagt
tcttccgatgaaaaacgttatcgtacattgaagaagcaagctgaacgcgaacttctggag
gcggcagatgttatatgttgcacttgcgtcggagcaggtgatccacgtttgcaacgcatc
aaattcagttctattctaattgatgaatcgatgcaatctacggaacccgaatgtatggtt
ccggtagtgctcggagccaagcaattgatcctagtcggagaccattgccaacttggtcct
gttgttatgtgcaagaaggctgcgaaggccggattatcgcaaagtttgttcgaacgtttg
gtcgtattggggattcgtccattccgcttggaagtacaataccgcatgcatccggagctg
tcgcagtttccatcgaatttcttctacgaaggaagcctgcaaaacggagtatgtgccgaa
gaacgaaagctgaaggttgatttcccatggccctcgccggatacaccgatgttcttttta
gtaacccaaggacaggaagaaatagctggatcaggaacatcctatttgaatcgcacggaa
gcatccaacgtagaaaaaataacgacgcggtttttgaaagctggagtaaagcctgatcag
atcggtatcattacaccatatgagggccagcgagcttacttggtacagtacatgcaatat
caaggatctctgcattctaagctgtatcaagagattgaaattgctagcgtggacgcgttt
caaggacgagagaaggacatcatcatcatgtcatgtgtacgatcgaatgaacaccaaggc
atcggctttctcaacgacccacggcgtctcaatgtagccttgacacgcgccaagtatgga
atcatcatcgtaggaaacccgaaggtactgtccaaacagcaattgtggaatcatttactg
aatttttacaaggacaaaaaagttctagtggaaggatccttgaataaccttaaggaatca
atgattcagtttactaaaccgaaaaagattgtcaacactttaaatcccggatcgcacttt
atgaacaatattatgtacgacgccaaggaagctggctacttcgaacgaggccacggttca
ggattttccggcagttcttttggcaatccaggtccaattggtagcatgatgaatggacct
aggaatcaacctttggatatgttttcaagaactcacgatcctataagctacatctcgccg
gatcgtgtccaggctgccatgaacaatgtacccatcccagtaggaatgttcatgaacatg
ccgaacgttcaaccgcgctatttccagcagcagcaagcagttcaagcagcaaaacaagca
cgtcgcaccaaaccaggagttatcggaagcaaaccaaaaccgcgtcccatcggtccacct
tccagtcaaatcaacacctctggagcaattggaactggttcactgacccaaggcatgtcg
caaaacatgtcacagcctggattcagcctttcgcaacaaccggatttctcgcaggactac
atggccgaatatcagtcccaagtagatgggcttttgtcgcaagagtccacctttggaccc
agccaatctgcagttgagcgtttggcatttgaccttccgccgaatcagttttcacaaccg
tattga
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