Armigeres subalbatus: 134226068
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Entry
134226068 CDS
T09975
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
asua
Armigeres subalbatus
Pathway
asua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134226068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asua03019
]
134226068
03041 Spliceosome [BR:
asua03041
]
134226068
Messenger RNA biogenesis [BR:
asua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134226068
Spliceosome [BR:
asua03041
]
Complex B
Other components
Prp19-related factors
134226068
Complex C
134226068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
TPR_12
TPR_8
Mad3_BUB1_I
TPR_10
ARM_TT21_C
RPN7
ARM_TT21
TPR_7
NRDE-2
SNAP
PPR
DALR_1
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
134226068
NCBI-ProteinID:
XP_062562571
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All DBs
Position
3:complement(352367436..352370339)
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AA seq
863 aa
AA seq
DB search
MPISSEVNLADVFFNEEDLPYEEEILRNAYSVKHWMRYVEHKRNAPKFVINTVFERALKE
LPGSYKLWYNYLRTLRRQVKGKCITDPEYEEVNNAFERALVFMHKMPRIWMDYCSFMTGQ
CRITRTRQVFDRALRALPITQHQRIWPLYLEFLGKFDIPETAVRVWRRYLKLCPEDAEEY
VEFLTGIGHLDEAAQQLASIVDNENFVSKHGKSNHQLWNELCELISKNPDKVHSLNVDAI
IRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFSQVFDAYAQFE
ELSLSKVMEEMAKNPTPTEADEIDVELRMARFEYLMERRLLLLNSVLLRQNPHNVAEWHK
RIELYEGKPHEIINTYTEAVHTVQPKLAVGKLYTLWVEFAKFYEKNKQLDDARIVFEKAV
QVDYLKVDELASVWCEWAEMEIRTENFENALKIMQRATAMPKRKVAYHDDTETVQMRVYK
SLKLWSMYADLEESFGTFQTCKQVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFKAYE
KGISLFKWPNVYDIWNTYLTKFLKRYGGQKLERARDLFEQCLDGCPPELAKHLYLLYAKL
EEDHGLARHAMAVYERATTAVKEDEAFAMFNLYIKKAAEIYGIPRTRQIYEKAIEVLPEA
QSRQMCSLFAEMETKLGEIDRARAIYAHCSQMCDPRITAEFWQTWKEFEIRHGNEDTMRE
MLRIKRSIQATYNTQINMMSATLINSAVTGAGSEPRDAMRALEAKAAETSARAIAAVGAS
GGNIMFVRGETQGGSKKDDKVVNPDEIDIDEDEDDEEEEDGDGEEGAEEEDVSKKMPVEK
QAIPSKLFGSLRRDEDEQDEEDD
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgccgatttcctcggaagtgaatctagcggatgttttctttaacgaggaggaccttccc
tacgaagaggaaatcctccgcaatgcatactcggtgaagcactggatgcgatacgtggaa
cacaaacgtaacgcacccaaattcgtgataaacaccgtgttcgagcgagcgctcaaggaa
cttcccggttcgtacaaactgtggtacaactatttgagaacattgcggcggcaggtcaag
ggaaaatgcatcacagatccggagtatgaggaggtgaacaatgccttcgagcgggcgttg
gtttttatgcacaaaatgcctcggatttggatggactactgctcgttcatgaccggtcag
tgccggatcacgcgcactcgacaggtgttcgacagggcgcttcgagccttaccgataacg
cagcatcaaaggatatggccactgtatcttgagtttttgggaaaatttgatattcccgaa
acggcggtgagagtgtggaggaggtatttgaagctgtgtcccgaggatgcggaggaatat
gtggagtttttgactgggataggacacctggatgaggcggcccaacagttggccagtatt
gtggacaatgaaaacttcgtgtcgaaacacggcaagtcgaatcatcaactgtggaacgaa
ttgtgcgagttgatctccaagaatccggacaaagttcactcattgaatgtggatgcgatt
attcggggagggttgaggcgatacacagaccagctgggccatttgtggaactcgttagcg
gattactacgtaaggagtggtttgtttgacagagcgagggatatttacgaagaggcaatc
caaactgtaacgactgtgcgggacttcagtcaggtgtttgatgcgtatgctcaatttgag
gagttgagcttgagtaaggtgatggaggagatggccaagaaccctacccccacggaagct
gatgaaattgacgtggaactaagaatggctcggtttgaatatctaatggaacgtagattg
cttttgttgaacagtgttctgctcagacagaacccacataacgttgcagagtggcacaaa
cgaatagagttgtatgaagggaaacctcatgagataatcaacacctacacggaggcagtg
cacacggtgcagccaaagctggccgtgggaaagctgtacaccctttgggtggaattcgcc
aaattctacgaaaaaaataaacagttggatgatgctcggattgtttttgagaaagctgtt
caagtcgactatctcaaggtagatgaactggccagcgtttggtgcgaatgggccgagatg
gaaattaggacggagaactttgaaaacgcgctgaaaataatgcaaagagcaacggccatg
cccaagcggaaggtcgcgtatcatgatgacacggagacggtacaaatgcgtgtttataaa
tctttgaaactgtggtccatgtacgctgatttggaggaatcgttcggaacgttccaaact
tgcaagcaagtttatgatagaatcattgatttgaagatttgtactcctcaaataatcatc
aactacggtctgttccttgaagagcataactattttgaggaggcgttcaaggcttatgag
aagggcatctcacttttcaaatggccaaatgtttacgatatatggaatacgtatttgaca
aagttcctcaagcgctatggcggccaaaagctggagcgtgctcgcgatttgtttgagcaa
tgtttggacggttgccctccagaactcgccaaacacctttatcttttgtatgccaaactc
gaggaagatcacggcttggctcgacatgcgatggccgtctatgaacgagccacgaccgcc
gtaaaagaggacgaagcatttgccatgttcaatctgtacatcaagaaagcggcggaaatt
tacggaatacctcgaacacgacagatctatgagaaggctattgaagtccttccggaggcg
caatcccgacagatgtgttcgttgtttgcagaaatggaaaccaaactgggcgaaatcgat
cgagcccgagcgatctatgctcattgcagtcagatgtgcgatccgcgcataactgcggaa
ttttggcaaacttggaaggagtttgaaatccgccacggcaacgaggacacgatgagggaa
atgcttcgaatcaaacgttccatccaggcgacgtacaacacccagatcaacatgatgtcg
gccacgctgatcaattcggctgtaacgggagccggttcggaaccgcgagatgcaatgcgg
gcgttggaggcaaaagcagcggaaacaagtgcgagggcgattgcggccgtcggagccagc
ggaggaaacatcatgttcgtccggggggaaacccagggtggatcgaagaaggacgacaag
gtggtcaatccggacgagatcgatatcgacgaggatgaggatgacgaagaggaagaggat
ggagatggggaggagggcgccgaggaagaggatgtcagcaagaaaatgcctgttgagaag
caagccattccgtcgaagttgttcggtagtttgcgacgtgatgaggatgagcaagatgaa
gaggatgattag
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