Atlantibacter subterraneus: NLZ15_10020
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Entry
NLZ15_10020 CDS
T08300
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
asub
Atlantibacter subterraneus
Brite
KEGG Orthology (KO) [BR:
asub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asub03019
]
NLZ15_10020 (hrpA)
Enzymes [BR:
asub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NLZ15_10020 (hrpA)
Messenger RNA biogenesis [BR:
asub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NLZ15_10020 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
nSTAND3
T2SSE
PhoH
ResIII
SLFN-g3_helicase
ABC_tran
HALZ
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UTJ49316
LinkDB
All DBs
Position
2124501..2128403
Genome browser
AA seq
1300 aa
AA seq
DB search
METKNLNLNALMARLDTLMLKDRQRFARRLHGAKKVKNPDAQQAIFAELDQQINEAAGKV
QLRLAARPEITYPDNLPVSQKKDDILAAIRDNQVVIVAGETGSGKTTQLPKICMELGRGI
TGLIGHTQPRRLAARTVANRIADELKTEPGGAVGYKVRFSDHVSESTQVKLMTDGILLAE
IQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHF
NHAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELSHEAPGDILIFMSGER
EIRDTADGLNKLNLPHTEVLPLYARLSNSEQNRIFQSHTGRRIVLATNVAETSLTVPGIK
YVIDPGQARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRP
EFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQA
SVYKLTPQGRQLSQLPVDPRLARMVLEAQKLGCVREAMIITSALSIQDPRERPMDKQQAS
DEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRADYLNYLRVREWQDIYTQL
RQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDTDKQEFTGARNARFSIFPGSGLF
KKPPKWTIVAELVETSRLWGRIAARIDPEWIEPVAQHLLKRSYSEPHWERAQGAVMATEK
VTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNQKLRAEVEELEH
KSRRRDILVDDESLFEFYDQRIGHEVISARHFDSWWKKASKENPDLLNFEKSMLIKEGAE
KVSKLDYPNFWHQGNLKLRLSYQFEPGGDADGVTVHIPLPLLNQVEDAGFEWQVPGMRRE
LIIALIKSLPKPLRRNFVPAPNYAEAFLGRATPLELPLLESLERELRRMTGVTVDREAWQ
WEQVPDHLKMTFRVVDEKNRKLNEGKDLTALKGSLKDKVQETLSAVADDGIEQSGLHIWS
FGTLPDHYQQKRGGYQVKAWPALVDEKESVGIKLFDNPQDQQNAMWRGLRRLLLLNIPSP
IKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIAEHGGPVWTEEGFAQLHEKV
RAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTGN
GYQRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVEAVQQAWQQWLNKLPAARRDDDEV
TAIRWMIEELRVSYFAQQLGTPYPISDKRVLQAMEQVGAS
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaaacctgaatctgaacgcgctgatggcgcgccttgatacgctgatgctg
aaagatcgccagcgtttcgcgcgccgtctgcatggcgcgaaaaaagtgaaaaatcctgat
gcccagcaggccatttttgccgagctggatcagcaaattaacgaagcggcagggaaagtt
cagctgcgccttgccgcacgccctgagattacctacccggataatctgccggtcagccag
aaaaaagacgacatcctggccgctattcgcgataaccaggtggtgattgtcgccggggaa
accggttcggggaaaaccacccagctgccgaaaatttgtatggagctggggcgcggtatt
accgggctcatcggccatacccagccgcgccgtctggcggcgcgtaccgtggcgaaccgt
attgccgatgagctgaaaaccgagccgggcggcgcggtgggctataaggtgcggttcagc
gatcacgtcagcgaatccacccaggtcaaactgatgaccgacgggatcctgctggcggaa
atccagcaggaccggctgctgatgcagtacgacacgctgattatcgatgaggcgcacgaa
cgcagcctgaacatcgatttcctgctcggctatctgaaagagctgctgccgcgtcgtccg
gatctcaaggtgattatcacctcggcgaccatcgacccggaacgcttttcgcgccacttt
aatcatgcgccgattattgaagtctccgggcgcacctacccggtggaagtgcgctatcgc
cccattgtcgaagacgccgacgataccgagcgcgaccagctgcaggcgattttcgatgct
gttgatgagctgagccacgaagcgcccggcgatattctgatctttatgagcggcgagcgg
gaaatccgcgataccgccgatggcctgaacaagctgaatctgccgcacactgaagtgctg
ccgctgtacgcgcgcttgtccaacagcgagcagaaccggattttccagtcccataccggg
cggcgcatcgtgctggcgaccaacgtggcggaaacctcgttgaccgtgccgggtattaaa
tacgtcatcgatccgggccaggcgcgcatcagccgctacagctaccgcacgaaagtgcag
cgtctgccgattgagccggtgtcgcaggcctccgccaatcagcgtaaaggccgctgcggt
cgcgtgtcggaagggatctgtatccgtctctactcggaagacgatttcctgtcgcgcccg
gaatttaccgacccggaaattctgcgcaccaacctggcgtcggttattttgcagatgacc
gcgctggggcttggcgacatcgccgcgtttccgtttgttgaagcgccggacaagcgcaac
atccaggacggcgtgcgcctgctggaagagctgggtgcgattaccaccgacgaacaggca
tcggtttataaactcaccccgcagggccgccagctgtcgcagctgccggtggacccgcgt
ctggcgcgcatggtgctggaagcccagaagctgggctgcgtgcgcgaggcgatgattatc
acctcggcgctgtcgattcaggatccgcgcgagcggcctatggataagcagcaggcgtcc
gatgagaaacaccgccgcttccacgacaaagaatcggatttcctggcgtttgtgaacctg
tggaactacctcggcgagcagcaaaaagcgctgtcgtcgaaccagttccgccgcctgtgc
cgggccgattacctgaactatttgcgggtgcgcgagtggcaggatatctatacccagctg
cgccaggtggtgaaagagctgggcattccggtgaacagcgaaccggcggagtaccgcgaa
atccacaccgcgctgctcaccggcctgctgtcgcatatcggcatgaaggatactgacaag
caggagtttaccggcgcgcgcaacgcccggttctcgatcttccccggttcagggctgttt
aagaagccgccgaaatggacgattgtcgccgaactggtggaaaccagccgcctgtggggg
cgcattgccgcgcgcatcgatcccgagtggattgagccggtcgcccagcacctgctgaag
cgcagctacagtgaaccgcactgggagcgggcgcagggtgcggtgatggccacggaaaaa
gtcacggtttacgggctgccgattgtcgcggcgcgtaaggtgaattacagccagatcgac
ccggcgctgtgccgcgaactgtttatccgccatgcgttggtggaaggcgactggcaaacc
cgtcacgcttttttccgggataaccagaagctgcgggccgaagtggaagagctggagcac
aaatcgcgccgtcgcgacatcctggtggatgatgaatcgctgttcgagttttacgaccag
cgcatcggccatgaggtgatttcggcccggcatttcgacagctggtggaaaaaagccagt
aaagagaacccggatctgctcaatttcgaaaagagcatgttgattaaagagggcgcggag
aaggtcagcaagctggactatccgaacttctggcatcagggcaatctcaagctgcgactc
agctatcagtttgagccgggcggcgacgccgacggggtgacggtgcatattccactgccg
ctgctcaatcaggtggaagacgccggttttgaatggcaggtgccggggatgcgccgcgag
ctgattatcgcgctgattaaatcgctgcccaagccgttacgccgtaactttgtgcctgcg
ccaaactatgctgaagccttcttaggccgcgccacgccgctggagctgccgctgctggaa
tcgctggagcgcgagctgcgccgcatgaccggcgtcaccgttgaccgcgaggcgtggcag
tgggaacaggtgcccgatcacctgaaaatgaccttccgggtggtggacgaaaagaaccgc
aagctcaacgaaggcaaagatctcaccgcgctgaagggtagcctgaaggataaagtgcag
gaaacgctctccgccgtggcggatgacggcatcgagcaaagcgggttgcatatctggagt
ttcggcacgctgccggaccattaccagcagaagcgcggcggctaccaggtcaaggcctgg
cctgcgctggtagatgaaaaagaaagcgtgggcatcaaactgtttgataacccgcaggat
cagcagaacgccatgtggcgcgggctgcggcgcttgctgttgttgaatatcccgtcgccg
atcaagtatctgcacgagaaattgcccaacaaagccaagctggggctttacttcaacccg
tacggtaaagtgctggatctgattgacgactgcatctcctgcggcgtcgataagctgatt
gccgaacacggcgggccggtgtggaccgaagagggctttgcccagttgcacgaaaaagtg
cgcgctgagcttaacgatacggtggtggatatcgctaaacaggtggagcagatcctgacg
gcggtgtttaacatcaacaagcggctcaaggggcgggtggatatgaccatggcgctgggg
ctgtcggatatcaaagcccaaatgagcgggctggtgtatcgcggctttgtaaccggcaac
ggttatcagcgcctcggcgataccctgcgctatttgcaggccatcgaaaaacgccttgag
aagctggctatcgatccgcatcgcgatcgcgcccagatgctgaaagtggaagcggtgcaa
caggcgtggcagcagtggctgaacaaactgcctgccgcgcgtcgtgatgacgacgaagtc
accgcgatccgctggatgattgaggagctgcgggtcagctacttcgcccagcagctcggg
acgccgtatccgatatccgataagcgcgtgctgcaggcgatggagcaggtcggcgcatca
taa
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