Arthrobacter sulfonylureivorans: MNQ99_04885
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Entry
MNQ99_04885 CDS
T08235
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asuf
Arthrobacter sulfonylureivorans
Pathway
asuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNQ99_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asuf03019
]
MNQ99_04885
03009 Ribosome biogenesis [BR:
asuf03009
]
MNQ99_04885
Enzymes [BR:
asuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNQ99_04885
Messenger RNA biogenesis [BR:
asuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNQ99_04885
Ribosome biogenesis [BR:
asuf03009
]
Prokaryotic type
rRNA helicases
MNQ99_04885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HEM4
Cas3-like_C_2
SUa-2TM
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
UNK46695
LinkDB
All DBs
Position
1003738..1005717
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AA seq
659 aa
AA seq
DB search
MSENTVNTLPENTDAAEAVEDENTVLFTDFGLDGRVLAALTDVGYEKPSPIQAATIPVLL
EGRDVVGLAQTGTGKTAAFAVPALSRMAELPPTKNTQILVLAPTRELALQVAEAFSSYAA
HMDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHIEKGSLDLSELQYMVLDEAD
EMLRMGFAEEVDQILSKTPEDKQVALFSATMPTAIRRIAKKYLKDPAEITVKAKTTTGTN
TRQRYLQVMGPHKLDAMTRILEAEDFDGVIAFVRTKMATEDLADKLKARGYRSAAINGDI
PQQQRERTVEALRDGKIDILVATDVAARGLDVERITLVVNYDIPHDTESYVHRIGRTGRA
GRSGDAILFMTPREKYLLRAIEKATRQPVEQMHLPSAETINNLRMRKFAEKITETLASED
VSIFRDLVANYETEHDVPAAEIAAALAVMAQGGRPLLVQDLPEAPKGQRERAGGGRDSMN
SRGPSRTLTEGNATYRIAVGRRNRVMPGSIVGAIANEGGLSAAQIGGIDIRSDHSLVELP
ADLSKDQLRALSKTRIGGELIHLELDAGRKPRRDRDDFGGGHRGGFRSDRGDRPFTKKSD
GDRPYKKKFDGDRPYKKNDGERSFSGERTFSSDRTDRGGFGGDRDRSFGGPRKPRHTRG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaaaacactgttaataccctgcccgaaaacaccgacgccgctgaggccgtcgaa
gacgaaaacaccgtactcttcaccgacttcggcctcgatggccgcgtcctcgcggcactg
accgacgtcggctacgaaaagccctcgccgatccaggccgccaccatccctgtgctgctc
gaaggccgcgacgtcgtgggcctggcccagaccggcaccggcaagaccgcagccttcgcc
gttccggcgctgtcccggatggccgagctgccgccgaccaagaacacccagatcctggtg
ctggcgcctacccgcgagctggccctgcaagtggcggaggcgttttcctcctacgccgcg
cacatggacgatttcaccgtgctgccggtctacggcggctccgcctacggcccgcagctg
gccggactgcgccgcggcgcccaggttgttgtcggcacccccggccgcgtgatcgaccac
atcgaaaagggttcgctggacctgtccgagctccagtacatggtgctggacgaggccgac
gagatgctgcgcatgggcttcgccgaagaggtggaccagatcctctcgaagaccccggaa
gataagcaggttgcgctgttctcggcgaccatgccgaccgccatccgccggatcgccaag
aagtacctgaaggacccggccgaaatcacggtcaaggccaagaccaccaccggcaccaac
acccgccagcgctacctgcaggtcatgggcccgcacaagctcgacgccatgacccggatc
ctggaagccgaagatttcgacggcgtgatcgccttcgtgcgcaccaagatggccaccgaa
gacctggccgacaagctcaaggcccgcggctaccggtccgccgccatcaacggcgacatc
ccgcagcagcagcgtgagcgcaccgtcgaggcgctgcgcgacggcaagatcgacatcctg
gtcgccaccgacgtggccgcccgtgggctggacgtcgagcgcatcaccttggtggtcaac
tacgacatcccgcacgacaccgagtcctacgtgcaccgcatcggccgcaccggccgtgcc
ggacgctcgggtgacgccatcctgttcatgaccccgcgcgagaagtacctgctgcgggcc
attgagaaggccacccgtcagccggtcgagcagatgcacctgccctccgccgagaccatc
aacaacctgcggatgcgcaagttcgcggaaaagatcaccgagaccctggcttccgaagac
gtctcgatcttccgcgacctggtcgccaactacgagaccgagcacgacgttccggcagcc
gaaattgccgctgccctggccgtcatggcccagggcggacgcccgctgctggtccaggac
ctgccggaagcaccgaagggccagcgcgagcgtgccggcggcggacgtgactccatgaat
tcacgcggcccgtcccgcaccctgaccgagggcaacgcgacctaccggatcgccgtcggg
cgccgcaaccgcgtgatgcccggctccattgtcggcgccatcgccaacgagggcggcctg
tccgccgcccagatcggcggcatcgacatccgctccgaccactcgctggtcgagctgccc
gcggacctgagcaaggaccagctgcgtgcgctgtccaagacccgcatcggcggcgagctg
attcacctggaactcgacgccggccgcaagccgcgccgggaccgcgacgacttcggcggc
ggccaccgcggtggattccgcagcgaccggggagaccggccgttcaccaagaagtccgac
ggcgaccgcccctacaagaagaagtttgacggggatcgtccgtacaagaagaacgacggc
gaacgcagcttcagcggcgaacgcaccttcagcagcgaccgcaccgaccgcggtggcttc
ggcggcgaccgcgaccgcagcttcggcggtccgcgcaagcctcgccacacccgcggctaa
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