Arthrobacter sulfonylureivorans: MNQ99_13435
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Entry
MNQ99_13435 CDS
T08235
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asuf
Arthrobacter sulfonylureivorans
Pathway
asuf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MNQ99_13435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asuf03400
]
MNQ99_13435 (mfd)
Enzymes [BR:
asuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MNQ99_13435 (mfd)
DNA repair and recombination proteins [BR:
asuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MNQ99_13435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UNK44950
LinkDB
All DBs
Position
complement(2910009..2913716)
Genome browser
AA seq
1235 aa
AA seq
DB search
MSLNGLRTALAQDDSFAKVRLQSARPVAERSEDLQIGAPPGLRAALLAEMVQGLETDLHA
AADGLGRSPEGAADGLGRSPEGAADGLGRSPRADTPPSTTGGVVLAVTATGRETEDLAAA
LRSYLPDESIEEFPSWETLPHERLSPRSDTVGRRLSVLRRLKHDDGAAPLRVVIAPVRAV
LQPLVQGLGELQSVALAVGDEVAFTDVVRRLSEAAYARVDMVSRRGEFAVRGGILDVFSP
TDDHPVRIEFFGDEVESMRWFAVADQRSLAGEHVKHPTRLYAPPCRELLITPSVMSRAAK
LKDQMPAAADMLEKIAGGIAVEGMESLSPVLVDAMVPFIGELPAGSIAVVIEPEKVRSRA
HDLETTNDEFLAAAWATASEGGDAPLDLALQGDLEQAGFRSLGDTRTAAGEHQVSWWSIT
SFNPDDETVLDIDTLTIAAREPRGYQGDVAEMMEFIGSRVRDQWRVVVATEGPGPASRMA
ELFHDAQIPATRVESLENEPQPGIIEITTASTGKGFVFDGLKLGLLTEADLLGRASARST
RDMRKMPSRRRNAVDPLQLTEGDYVVHEQHGVGRFVELVQRSTGAGPTKAMREYLVLEYA
ASKRGAPGDRLFVPTDQLDQVTRYVGGETPVLSKMGGSDWAKTKSQARKAVKEIAGELIR
LYSARMASRGHAFGPDTPWQRELEEAFPYIETPDQLTTINEVKADMEREVPMDRLVSGDV
GYGKTEIAVRAAFKAVQDGKQAAVLVPTTLLSQQHFETFSERFSGFPVRVKALSRFQTSK
EAKDTMEGIKNGSIDVVIGTHRLLSKEVQFKDLGLVIVDEEQRFGVEHKESLKKMRTNVD
VLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDQQTTAAIRRELMREG
QVFFVHNRVSSIERQAARIRELVPEARVEVAHGQMSESRLEQIIVDFWEKRFDVLVCTTI
IETGLDISNANTLIVDRADRYGLSQLHQLRGRVGRGRERAYAYFLFDAEKPLGEVALERL
KAVAAHNELGAGMQLALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRLVGEAVADFRGET
EQKVADMKIELPVNAHLPHDYVPGERLRLEAYRKLAQAATDAAIDEVVAELTDRYGELPE
PVQNLVAVARFRVRARAAGLTDVAVQGNFIKFAPAALPESKVMRLTRMYPGSQVKPALDF
ILIPKPKTARIGGRDLADRQILEWAQGVIDAVFTE
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcgcacagccctcgcccaggacgattcgttcgccaaggtgcgg
ctgcagtcggcccggcccgtggcagagcgcagcgaggacctgcagatcggtgcgccgccg
gggttgcgggcggcgttgctggccgagatggtgcaggggctggaaacggatctccacgcg
gccgcggacggccttggtcgatcaccggagggggccgcggacggccttggtcgatcaccg
gagggggccgcggacggccttggtcgatcaccgagggcggacacgccgccgtcgaccacc
ggcggagtggtgctggccgtgacggccaccgggcgggagaccgaagacctggccgcggcg
ctgcggagctacctgccggatgagtccatcgaggagttccccagttgggagacgttgccg
cacgagcggctgtcgccgcgatcggacaccgtggggcgccggctctcggtgttgcgccgg
ctgaagcacgacgacggcgcggcgccgctgcgcgtggtcatcgcgccggtgcgtgcggtg
cttcagccgctggtccaggggctgggcgagctgcagtcggttgcgctggcggtcggcgac
gaggtggccttcaccgatgtggtccgccgcttgtccgaagccgcctacgcccgggtggac
atggtcagccggcgcggcgagtttgccgtgcgcggcggaattttggatgtcttttcgccc
accgatgaccacccggtgcggattgaattcttcggcgacgaagtcgaatcaatgcgctgg
ttcgccgtggcagaccagcggtccttggccggcgagcacgtcaagcaccccacccggctg
tacgccccgccgtgccgggaactgctgatcaccccgtcggtgatgagtcgtgcggcgaag
ctcaaggaccagatgcctgccgcggcggacatgctggaaaagatcgccgggggtatcgcg
gtcgagggcatggaatcactctcgccggtgctggtggatgccatggtgcccttcatcggc
gaactgccggccggatccatcgccgtggtgattgaaccggaaaaggtgcggagccgggcc
cacgatctggagaccacgaacgacgagttcctcgccgccgcctgggccacggcgtccgag
ggcggggacgcgccgctggacctggcactgcagggggatctggagcaggccggcttccgc
tccctgggcgacacacgcacggcggccggagagcatcaggtgtcctggtggtccatcacg
tcgttcaatcccgacgacgaaaccgtactggacatcgacaccttgaccatcgcggcccgc
gagcccaggggctaccagggcgatgtggccgagatgatggagttcattggttcccgcgtg
cgcgaccaatggcgcgtggtggtggccaccgaaggtcccggccccgcctcgcgcatggcc
gaactcttccacgacgcgcagatcccggccacgcgggtggaatcgctggaaaacgagccg
cagccggggatcatcgaaatcaccacggccagcaccggcaaggggttcgtcttcgacggc
ctgaaactcggcctgctgaccgaagccgacctgctgggccgtgcctccgcacgctccacc
cgggacatgcggaagatgccgtcgcggcggcgcaacgccgtggatccgctgcagctgacc
gaaggcgactacgtggtgcacgagcagcacggcgtgggcaggttcgttgaactggttcag
cgctccaccggcgccggacccaccaaggccatgcgcgagtatctggtgctggaatatgcc
gcgtcgaagcggggcgcccccggggaccggctgtttgtaccgacggaccagttggaccag
gtcacccggtacgtgggtggcgagacgcccgtcctgtccaagatgggcggctccgattgg
gcgaagaccaagagccaggcccgcaaggcggtcaaggagatcgcgggcgagctgatccgg
ctgtattcggcccggatggcgtcccgcgggcacgccttcgggccggacaccccgtggcag
cgggagctggaagaagcgttcccgtacatcgagacccccgaccagctgaccacaatcaac
gaggtcaaggcggacatggagcgtgaagttccgatggaccgcctggtctccggtgatgtg
ggctacggcaagaccgagatcgcggtgcgcgccgccttcaaggcggtccaggacggcaag
caggcggcggtcctggtgccgaccacgctgctgtcccagcagcacttcgagaccttcagc
gaacgcttctccgggttcccggtcagggtcaaggcgttgtcccgcttccaaacgtccaag
gaagccaaggacaccatggaaggcatcaagaacggcagcatcgacgtggtcatcgggacg
caccggctgctctccaaagaggtccagttcaaggacctgggcctggttattgtggacgag
gaacagcggttcggcgtcgagcacaaagaatcgctgaagaagatgcgcaccaacgtggac
gtgctggccatgtccgcgactccgatcccgcggaccctggagatgtcgctgaccggcatc
cgcgagacgtccacgctggcgacgccgccggaggaacgccacccggtgctgacgtacgtt
ggcccgtacacggaccagcagacgacggcggcgatccggcgcgagctgatgcgcgaagga
caggtctttttcgtgcacaaccgcgtctcgtccatcgagcggcaggcggcgcggatacgg
gaactggttcccgaggcgcgggtggaagtggcgcacgggcaaatgagcgagtcgcggctg
gaacagatcatcgtcgatttctgggaaaagcgattcgacgtcctggtctgcaccaccatc
atcgaaaccgggctggacatctccaacgcaaacacgctgatcgttgaccgggcggaccgg
tacgggctatcccagctgcaccagctgcgcggccgggtgggccgcggccgggagcgggcg
tacgcgtacttcctgttcgacgccgagaaacccctcggcgaagtggcgctggagcggctc
aaggcggtggcggcgcacaacgaactgggtgccggtatgcagctggcgctgaaggacttg
gaaatccgcggcgcaggaaacctgctcggcggggaacagtccgggcacattgccggcgtc
ggctttgatctatacatccggctggtcggcgaggccgtggcggacttccgcggcgaaacc
gagcagaaggtggccgacatgaaaatcgagctgccggttaacgcccacctgccacacgac
tacgtgccgggggagcgcctgcggctggaggcctaccggaagctggcgcaggcggccacc
gatgcagccatcgacgaagtggttgccgagctcaccgaccgttacggcgagctgccggag
ccggtgcagaatctcgtcgccgtggcacgtttccgcgtccgcgcccgtgcggccggtctg
acggatgtggcggtgcagggcaacttcatcaagttcgcgccggcggcactgccggagtcc
aaggtgatgcggctgacccggatgtacccggggtcgcaggtgaaacccgcgctggacttt
atcctgatccccaagcccaagaccgcgaggatcggcggcagggacttggccgaccgacag
atcctggagtgggcgcagggggtcatcgacgcggtgttcaccgagtag
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