Arcobacter suis: ASUIS_0088
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Entry
ASUIS_0088 CDS
T06792
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asui
Arcobacter suis
Pathway
asui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASUIS_0088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asui03019
]
ASUIS_0088
03009 Ribosome biogenesis [BR:
asui03009
]
ASUIS_0088
Enzymes [BR:
asui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASUIS_0088
Messenger RNA biogenesis [BR:
asui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASUIS_0088
Ribosome biogenesis [BR:
asui03009
]
Prokaryotic type
rRNA helicases
ASUIS_0088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
Ribosomal_L12_N
Motif
Other DBs
NCBI-ProteinID:
AXX88606
UniProt:
A0AAD0WPE5
LinkDB
All DBs
Position
81712..83388
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AA seq
558 aa
AA seq
DB search
MTFNEFNLKDLLQKAIDEAGFKEPSPIQEQAIPFVLAGRDIVGQAHTGTGKTAAFGLPIL
NNMKGNSGVEAVVIVPTRELAMQVSDELYRFGKFLGVNTATVYGGQAYARQIKLIENAGI
IVATPGRFLDLLRGNKIDIKPNYVILDEADEMLDMGFLDDIKEIFTFLPKERQTLLFSAT
MPLAIKNLAKTILNNPEFITLTKSDVTNSKITQTFYVVDERERDDALIRLYDYKNPTKSI
IFCRTKKEVDRLSTFMVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGIAVSIVTPHEFRMLQKIEKNIGTKLE
AKIVPDIDSVKVKKIAELKNQISEQEIKDYALALVEELKEEFDISTIAFKLASMISASTF
VQGNNNIGKTESDIKRLIENSSRYDSEGSSSGRNSRGGSRFGSRGGSRGGDRDRNSRPSG
DRNSRGGDRDRAPRGDRPAGDRAPRPAGDRPKPSGDRDRAPRGDRPAGDRAPRPSGDRPK
PSGDRSPRPSGDRSRKRD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaacgaattcaatttaaaagatttattgcaaaaagcaatagatgaagcaggt
tttaaagaaccaagtccaatacaagaacaagcgatcccgtttgtattagcaggtagagat
attgttggacaagcacatacaggaacaggtaaaacagcagcatttggacttcctatttta
aataatatgaaaggtaattctggtgttgaagcagttgttattgttcctacaagagaactt
gcaatgcaagtttcagatgaattatatagatttggtaaattcttaggtgttaacactgca
actgtgtatggtggacaagcttatgctagacaaatcaaattaatagaaaatgcaggaatt
attgtagcaactccaggaagatttttagatcttttaagaggtaataaaattgatattaaa
cctaattacgtaattcttgatgaagcagatgaaatgcttgatatgggatttttagatgat
attaaagaaatttttactttcttaccaaaagagagacaaactctattattttctgcaaca
atgccattagcgattaaaaatcttgctaaaactattttaaataacccagagtttattact
ttaacaaaaagtgatgttacaaattcaaaaattactcaaactttttacgttgttgatgaa
agagaaagagatgatgcattaattagattatacgattacaaaaatccaactaaatctatt
attttttgtcgcacaaaaaaagaagttgatagattatcaacatttatggtttctcaagga
tttatggcaaaaggtcttcatggtgatatggagcaaagacaaagagaagaagcaattaga
gcgttcaaaacttctaaattagaaattctaattgcaacggatgttgcagctagaggatta
gatgttaatgatgtttctcatgtatttaattatcatttaccatttgattctgagtcttat
gtacatagaattggtagaacaggaagagctggaaaagaaggaattgctgtatctattgta
actccacatgagtttagaatgttacaaaaaattgaaaaaaatattggtacaaaattagaa
gctaaaatagttcctgatattgattctgtaaaagtgaaaaaaatagctgaattaaaaaat
caaattagtgaacaagaaattaaagattatgctttagctttagttgaagaactaaaagaa
gaattcgatatttctactattgcatttaaattagcatctatgatttcagcatctacattt
gttcaaggtaataataatattggaaaaactgagtctgatattaaaagacttattgaaaat
tcaagtagatatgatagcgaaggttcatcttctggaagaaattcaagaggtggaagtaga
tttggttcaagaggtggttcacgaggtggagatagagatagaaattctagaccatctgga
gatagaaactcaagaggtggagatagagatagagctccaagaggtgatagaccagcaggt
gacagagcaccaagaccagcaggagatagaccaaaaccaagtggagatagagatagagct
ccaagaggtgatagaccagcaggtgatagagcaccaagaccatcaggggatagaccaaaa
ccaagtggtgacagaagtccaagaccatctggtgatagaagtagaaaaagagattaa
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