Achromobacter spanius: CVS48_05360
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Entry
CVS48_05360 CDS
T05274
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asw
Achromobacter spanius
Pathway
asw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS48_05360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asw03019
]
CVS48_05360
Enzymes [BR:
asw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVS48_05360
Messenger RNA biogenesis [BR:
asw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVS48_05360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
AUA55507
LinkDB
All DBs
Position
1193548..1195074
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AA seq
508 aa
AA seq
DB search
MTTSSPFADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFT
LPILHLLMQQKPEARKPGRPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNIN
PQISALRKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILAL
LPKQRQNLLFSATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLI
SHIIRESGWHQVLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTV
TVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKL
LKDIERLIKKTIERKPVEGWTPSPTSAAAFERQERDEDARSPRGGNRNGGRGGNGGNAGR
GGNAGAGRSRPAQGQARAATGGRAPAPARAGGEGRGNGGQRDGKPADRPAHAGRGESRPQ
QAPRRPEGAPRPAGNSGSGRPRAALLGK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
ttgactacctcttcccctttcgccgacctcgggctggctgattccctgttgcgcgccatt
gccgataccggctacaccgcacccacgcctattcaagcccaggcgattccccaagttttg
aaaggtggcgatttgctcgccgccgcgcaaaccggcaccggcaagaccgccggtttcacg
ctgcccatcctgcatttgctgatgcagcaaaagccggaagcgcgcaagcccggccgcccc
cgttgcctgattctgaccccgacgcgcgaactgaccgcgcaggtggccgaatcggtacaa
acctacggcaaatacacctcgctgacgtccatggtgatgtttggcggcgtcaatatcaac
ccccagatctccgcgctgcgcaagccgctggacatcctggtggcaacgccgggccgtctg
ctcgaccattgcggccagaagacggtggacctgtccggcgtcgaaatcctggtgctggac
gaagccgaccgcatgctggacatgggcttcatccgcgacatccgcaagatcctcgccctg
ctgcccaagcaacgccagaacctgctgttctcggccacgttctcggatgaaatccgcacg
ctggcgcgtggcgtgctgaacaacccgggcgaagtctcggtcaccccgcgcaacaccgcc
accgaactggtcacccagacggtgcacatggtggaacagcatcataagcgcgacctgatc
agccacatcatccgtgaaagcggctggcaccaggtgctggtgttcacgcgcaccaagcac
ggcgccaaccgcctggctgaaaagctggtcaaggacggcctgaccgccgccgccatccac
ggcaacaagagccaatcggcccgcacccgcgcgctggccggcttcaaggacagcaccgtg
acggtgctggtggcgaccgacatcgccgcccgtggcctggacatcgaccagcttccccag
gtggtgaacttcgaactgccgaacgtgccggaagactatgtgcaccgtatcggccgtacc
ggccgcgccggcgccacgggcgctgccgtctcgctggtcgacaacagcgaaatcaagctg
ctgaaagacatcgagcgcctgatcaagaagacgatcgagcgcaagccggtcgaaggctgg
accccgtcgcccaccagcgccgccgccttcgaacgccaggaacgcgatgaagacgcgcgc
agcccgcgcggcggcaaccgcaacggcggtcgtggcggcaatggcggtaacgccggccgt
ggcggcaatgccggtgccggccgttcgcgtccggcccagggccaggcccgcgccgccacc
ggcggccgcgcccccgcaccggctcgcgccggcggcgagggtcgtggcaatggtggccaa
cgcgacggcaagcccgctgaccgtccggctcacgccggccgcggcgaaagccgtccgcag
caggctccgcgccgtcccgaaggcgccccgcgtccggcgggcaatagcggttcgggtcgt
ccgcgcgcggccttgctgggcaagtaa
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