Achromobacter spanius: CVS48_18805
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Entry
CVS48_18805 CDS
T05274
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asw
Achromobacter spanius
Pathway
asw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CVS48_18805 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asw03400
]
CVS48_18805 (ligD)
Enzymes [BR:
asw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CVS48_18805 (ligD)
DNA repair and recombination proteins [BR:
asw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CVS48_18805 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUA57883
LinkDB
All DBs
Position
complement(4175036..4177639)
Genome browser
AA seq
867 aa
AA seq
DB search
MADSLKTYRQKRNFKVTTEPAEGGQANESARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPCFDPSVKRMAVQVEDHPIAYNQFEGQIPEGQYGAGKVIIWDEGVWTPVADARKGYR
EGHLKFDLQGKKMQGRWALVRMKGKEGDKQPPWLLIKDRDAYARPEREFSVVDEMPDSVV
PLRDAKAVGKTKAKAKAATKSATAAATTPDTDTKASSTASKLPGRPADLPTSFKPQLATL
VDGLPPHAEDWLYELKFDGYRLLVRIEGESVKLYTRNGHDWSAKLPHIVQAFAKLPAKWA
WVDGEVVVLNDQGVPSFQALQNAFDNDRTGDIVFYAFDLPFIGCRDLREEPLTVRRDLLA
QLMDTADDDFLRFSEAFKETPSNLVASACKMGLEGIMAKRQSAPYVSRRSDSWLKIKCAK
RQEFVIVGYTAPQGAREGLGALLLAVHEDDGALRYAGKVGTGFDRQGLIALHKTLSGLET
DKKPVSGGQAKGVHWVKPELVAEVSFGEWTSGGHIRHSVFRGLRQDKPPSQITREKPAAA
SGSQAVSTDKPRAKSQVKSTNSPTTKPQATAPARAKPARLTHPERVIDPSTKLTKLDLAR
YYGLVAPLMLEHLKGRPVSFLRAPSGIDGQLFFQKHLEAAMPGVKSLPTRLDPDHPPLLE
VPTAEAIMSAVQMNVVEFHTWNAVKTAISKPDRMLFDLDPGEGVKWATMQQAARLVHTML
DELGLESWLKTSGGKGLHVVVPLRRQYDWDTLKSFAQTVVVHLARTLPQIFVAKSGPKNR
VGKIFADYLRNGFGATTVAAWSARARPGMGVSVPVAWDELDKLSSGAHWTISNIHERLDA
GNSPWDGYAPQAVGPAMDALDFKRGKS
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagtcttaaaacctaccggcaaaagcgcaatttcaaggtgaccaccgaaccc
gccgagggcgggcaggccaacgagtccgcgcgcgctttcgtcatccagaagcactgggcc
agccggctgcactacgactttcgcctggagctggacggcgccatgaaaagttgggctgtg
cccaaggggccttgtttcgacccctcggtcaagcgcatggccgtacaggtggaagaccac
cccattgcctacaaccagttcgaaggccagattcccgaaggccaatacggcgcgggcaag
gtcatcatctgggacgaaggggtctggacacccgtggccgatgcgcgcaaaggctatcgc
gaggggcacctgaagttcgacctgcaaggcaagaagatgcagggccgatgggcgctggtg
cgcatgaagggcaaggaaggcgacaagcagccgccgtggctgctgatcaaggaccgcgac
gcctatgcgcgccccgaacgcgaattcagcgtggtggacgaaatgccggacagcgtggtg
ccgctgcgggatgcgaaggccgttggcaagacgaaggctaaagccaaggccgctacgaag
tccgctacagcggccgccactacgcccgataccgataccaaggcctcctccacagcaagc
aagctgcccggccggccggccgatctgcccacctcattcaagccccaacttgccacgctg
gtagacggcctgccgccgcacgcggaagactggctgtacgaactgaaattcgacggctac
cgcctgctggtgcgcatcgaaggggagtcggtcaagctgtacacccgcaacggccacgac
tggagcgccaagctgccgcatatcgtccaggcgtttgccaagctgcccgccaaatgggca
tgggtcgatggcgaggtggtcgtgctgaacgaccagggcgtgcccagtttccaggcgctg
caaaacgcttttgacaacgaccgcaccggcgatatcgtgttctacgcctttgacctgccg
tttatcggctgtcgggacctgcgcgaagaaccgctgaccgtgcggcgtgacctgctggcg
caattgatggacaccgccgacgacgactttctgcgctttagcgaagcgttcaaggaaacg
ccgtcgaacctggtggcgtcggcctgcaagatggggctggaaggcatcatggccaagcgc
cagtcggcgccgtatgtatcgcggcgcagcgatagctggctgaagatcaagtgcgccaag
cgacaagagttcgtcatcgtgggctataccgccccgcaaggtgcgcgcgaaggcctgggc
gccttgctgctggccgtgcatgaggacgacggcgccttgcgctatgcgggcaaggtcggc
accggctttgaccgccaggggttgattgcgctgcacaagactttatccggccttgaaacc
gacaagaagcccgtcagcggcgggcaggcgaaaggagtgcactgggtcaagccggaactg
gtggccgaggtgtcgttcggcgaatggaccagcggcgggcatatccgccattcggtcttt
cgcggcttgcgccaagacaaaccgcccagccagatcacacgggaaaagccggctgcggcg
tctggatcgcaggccgtgagcaccgacaagccgcgggccaagtcccaggtcaagtccacc
aactcgcccaccaccaagccccaggccacggcccccgcgcgcgccaaacccgcgcggctg
acgcaccccgagcgcgtcatcgatccgtcgaccaaactgaccaagctggatctggcgcgt
tattacggcctggttgcacctctgatgctggaacacctgaaaggccgccccgtatccttt
ctgcgcgcgccttccggcatcgacggccagctctttttccagaagcacctggaagccgcc
atgccgggcgtgaagtccttgcccacgcgcttggacccggatcatccgccgctgctggaa
gtgcccaccgccgaagccatcatgtcggccgtgcagatgaacgtggtggaattccatacc
tggaacgccgtgaaaacggccatctccaaacccgaccgcatgctgttcgacctggacccc
ggcgaaggcgtcaagtgggcgacgatgcagcaggctgcccgcctggtgcacaccatgctg
gatgaacttggcctggaatcctggctgaaaaccagtggtggcaagggcttgcatgtggtc
gtgccgctgcgccgtcaatacgattgggacacgctcaagtcctttgcgcagaccgtcgtg
gtgcatctggcccgcaccttgccgcagattttcgtggctaaaagcggccccaagaatcgc
gtgggcaagatctttgccgactatctgcgcaatggctttggcgcaacgacggtggccgcg
tggtcggcgcgggcgcggcccggcatgggcgtgtcggtgccggtggcgtgggacgaactc
gacaaactatccagcggcgcgcactggaccatcagcaatatccatgagcgtctggacgcg
ggcaactcaccctgggacggctatgcgccgcaagcggtggggccggccatggatgcgctg
gatttcaagcgtggcaagtcatga
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