Alkalitalea saponilacus: CDL62_00420
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Entry
CDL62_00420 CDS
T04906
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDL62_00420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asx03019
]
CDL62_00420
03009 Ribosome biogenesis [BR:
asx03009
]
CDL62_00420
Enzymes [BR:
asx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDL62_00420
Messenger RNA biogenesis [BR:
asx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDL62_00420
Ribosome biogenesis [BR:
asx03009
]
Prokaryotic type
rRNA helicases
CDL62_00420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASB47722
UniProt:
A0A1T5HSR1
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All DBs
Position
116304..117971
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AA seq
555 aa
AA seq
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MQTFIETGLRPEILESVEKLGFTQPTPIQSQTIPFLLNSEQDLIAMAQTGTGKTAAFGLP
ILHKLDTEMVGVQSIILCPTRELCLQITNDLKSFTLAMNISIVPVYGGAPIYEQISAIRK
KCNIVVGTPGRVNDLVNRGKLNLSGIRFLVLDEADEMLKMGFKDEMDAILDQTPDSKQTL
LFSATMPPDINRMAGKHMQNPHTISVSRQNTSNTDISHEYCVTSPPNTYQALRRIADINP
DIYGIVFCRTRQETKDIADKLMGDGYNADALHGDLSQAQRDYVMGRFRNRNLQILVATDV
AARGLDVDNLTHVIHYHLPDDPENYIHRSGRTGRAGRKGKSIAILAPAETRRLSFMEKQA
GHKFIHTPIPNGKEVFEKRLINFMGEVSQSEPEGFDADQYLKSVEMMFEGLSKEEVIKKL
IAHNFNRLHKDYQGTADLNVDTGRRARTTENRGARRSVGEKFAKYSINVGSKNDLRPDVL
ISIINRQTPDKKIAIGKIDIQKKVSFFEADSQHEKHLIKAFRRARYKGMSLMVQPMDVMP
SKRSSGKRNGGKWKN
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacatttattgaaacgggattacgtcccgaaattcttgaatcagttgaaaagctc
ggattcactcagccaacacctattcaatcacaaaccattccatttttattgaattcagag
caggatttaattgccatggctcaaacaggaacaggaaaaaccgctgcttttggtttaccc
attcttcataaattggatacagaaatggttggtgtacaatccatcattttatgtccaacc
agagagttgtgtcttcaaatcactaatgatttgaagtcgtttacactggccatgaacatt
tccatcgtaccggtttacggtggagcacctatttatgagcagatttctgcgattcgtaaa
aagtgtaatattgtagttggaacccctggaagggttaatgacttagtaaaccgtggaaag
cttaatttgtcgggcatccgctttttagtgctggatgaagccgatgagatgctgaaaatg
ggttttaaagatgagatggatgccatcctggatcaaacccctgattcaaaacagaccttg
cttttttcggcaaccatgcccccggacattaacagaatggccggaaaacacatgcaaaat
ccgcataccatttcggttagccgacaaaatacatccaatactgatatcagtcatgagtat
tgtgtaacatctccaccaaacacatatcaggctttaagaaggatcgctgatatcaacccg
gatatttatggaatagttttttgtagaactcggcaggaaaccaaagacattgctgataaa
ctaatgggtgacggttacaatgccgatgcacttcatggtgatttatcacaggctcagaga
gattatgttatgggacgtttcagaaacaggaaccttcagattctcgtagcaactgatgtt
gcagccagaggtttggatgttgacaacctgacacacgtcatccactatcacttaccggac
gacccagaaaactacatacaccgaagtggtcgaaccggacgtgccggtagaaaaggaaaa
tccattgcgattcttgctcctgccgaaaccagacgtttatcttttatggaaaaacaggcc
ggacacaaattcatccacactcccattccaaacgggaaagaggtgttcgaaaaaagattg
attaactttatgggggaagtttctcaatcggaaccggaaggttttgatgcagaccagtat
ttgaagtctgttgaaatgatgtttgaaggtttaagtaaagaagaagttattaaaaaactc
attgctcataactttaacaggcttcacaaagattatcagggtactgccgatctgaatgtc
gacacaggcagaagagccagaacaactgagaatagaggtgccagaagaagtgttggtgaa
aaatttgctaaatactccatcaacgttggatcgaaaaacgatttgcgccctgatgtactg
atcagcatcatcaacagacaaacccctgataaaaaaattgccattggcaagattgatatt
cagaaaaaagtttcgttctttgaggccgacagtcagcatgaaaagcacttgattaaagct
tttagaagagcacgttacaaagggatgagcctgatggtgcaacctatggacgttatgcct
tcaaaaagaagtagtggaaaacgtaacgggggaaagtggaaaaactaa
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