Alkalitalea saponilacus: CDL62_00865
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Entry
CDL62_00865 CDS
T04906
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDL62_00865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asx03019
]
CDL62_00865
Enzymes [BR:
asx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDL62_00865
Messenger RNA biogenesis [BR:
asx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDL62_00865
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASB47802
UniProt:
A0A1T5HLC2
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All DBs
Position
complement(241997..243241)
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AA seq
414 aa
AA seq
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MKFTEFGFNAEILEGLEAMRFEEATPVQQETIPVIMTGNDIIACAQTGTGKTAAYLLPVL
NELIETKDTTTTTLILVPTRELAIQIDQQMQGFSYFLPVTSVAVYGGNDAGLWDQQRKAL
TTGANVVVATPGRLIQHLTMEYFKFSNLKHLILDEADRMLDMGFHDDIMQIVKSMPQKRQ
TLLFSATMPPKIRELSRKLLSNPKEVSIAISKPAEGILQAAYLVYDTQKIPLINSLLKDK
EMNSVIIFSSTKLKVKEIHRALLKEGFAAEAIHSDLEQAEREKVMLGFRNRRVKILVATD
IIARGIDVDGIDLVINYDVPGDAEDYVHRVGRTARAKSTGVALTFINDMEQEKFSYIEKL
IEKEIFKSPLPDGFEQGPEYNPDAPPRKRFFKKGHPPKKKFNKGKRPGNRAQMG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagagtttggatttaatgccgaaatcctggaaggattagaggcaatgcgt
tttgaagaagcaactcccgttcagcaggagaccatcccggttatcatgaccggaaacgac
atcattgcatgcgcgcaaaccggcaccggtaaaaccgctgcctatcttttaccggttctc
aatgagcttatcgaaaccaaagatacgaccaccactaccctgattttggttcccacaagg
gaactggccatacaaattgaccaacaaatgcaggggttttcatattttctgccggtaact
tctgttgctgtttatggcggaaatgatgccggattgtgggatcagcaaagaaaggcactc
acaactggagccaatgttgttgtagcaactccgggacgactgattcagcatttgaccatg
gaatactttaagttttcaaacttaaagcatcttattttagatgaagccgataggatgctg
gatatgggttttcatgatgacattatgcaaattgtgaaatcaatgccgcaaaagcgtcaa
acgcttttgttttcggccaccatgcctccaaaaatcagggagctttcaagaaagctcctt
tccaatcccaaagaggtgagcatagccatatcaaagcctgctgaaggaattcttcaggct
gcttatctggtttacgatacacagaaaattccactcatcaactctttgttgaaagacaaa
gagatgaacagcgtgattattttctcttcaacaaagctaaaagtgaaagagatacaccgt
gcactgcttaaggagggatttgctgctgaagccattcattccgatttggaacaggctgag
cgtgaaaaagtgatgttgggtttccgaaaccgacgggtgaaaatccttgtggccaccgat
atcatagcacgtggtattgatgtggatggtattgacctggttatcaactatgatgtgccg
ggcgatgcagaagattatgtacaccgcgtgggaagaacagccagagctaagtcaaccggc
gtggcactgacttttattaacgatatggagcaggagaagttctcgtacattgagaagtta
attgaaaaggagatttttaaatctcctttgcctgacggttttgagcaggggcctgagtac
aatcccgatgcacctcctcgaaagcgtttcttcaaaaaggggcatcctcccaaaaaaaag
tttaataaggggaaaaggcctggtaacagggcgcagatggggtag
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