Alkalitalea saponilacus: CDL62_00885
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Entry
CDL62_00885 CDS
T04906
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDL62_00885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asx03019
]
CDL62_00885
03400 DNA repair and recombination proteins [BR:
asx03400
]
CDL62_00885
Enzymes [BR:
asx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDL62_00885
Messenger RNA biogenesis [BR:
asx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDL62_00885
DNA repair and recombination proteins [BR:
asx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CDL62_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
zf-CXXC
Cas3-like_C_2
GntR
Motif
Other DBs
NCBI-ProteinID:
ASB47806
UniProt:
A0A1T5HL41
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All DBs
Position
complement(245805..247715)
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AA seq
636 aa
AA seq
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MTNYREILKKYWGYDDFRPMQEDIIKSVGEGKDTLGLLPTGGGKSITFQVPAMAKPGICL
VVTPLIALMKDQVENLKKKGIKAYAVHSGLTGMEIQIAYDNCIYGGVKFLYLSPERLSTP
VFLEKLQHLKVNLLAIDEAHCISQWGYDFRPGYLKIADVREHLPNVPVLALTATATPRVV
DDIQEQLRFEKKNVFQKSFERTNLAYVVRKCEDKEGQLVKILSSVQGTAVVYVRNRKKTR
EYAEHLQKNGISADYFHAGLTQKVKDFRQQQWKSGACRVIVSTNAFGMGIDKPDVRIVVH
MDAPDSLEAYFQEAGRAGRDEKKAYAVMLFSPADKMQLNKSVTTSFPEKEVIHKVYDSLC
NFFQVAVGHGEGLVLDFNIGKFCTAFGFNILSVFNSLKILQRAGYLYYTEDSDIPSKVMM
QMSDFELYKYQVANAKLDPFIKVLLRSYTGLFTEYASIDEDLLAQRLKVTRDDVYQALLT
LSRAKVLHYIPQRRTPLITFLHRREELRHIVLAPEIYEQRQKEYRQRVDAVLEYATTTHI
CRSRLLLHYFGQGNSNNCGHCDVCLDRKKQNLTDDEFSKIEEAIYNTLNAEPISAESLTE
KLSFAQDKTWKVIHWLEDVGAVSENQDGVMEWIGKR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgacaaactaccgtgaaatattaaagaaatactgggggtacgatgattttcgtcccatg
caggaggatattatcaaatcggtaggagaaggaaaagatactttgggacttcttccaact
gggggcgggaaatccattacatttcaggttccggccatggctaagcccggtatttgtttg
gtggttacgcctctcattgctttgatgaaagatcaggtggaaaaccttaaaaagaaaggc
atcaaagcttacgcagtccattccggattaaccggaatggagattcagattgcgtatgat
aattgtatttacgggggcgtaaagtttctgtatctctccccggaaaggttatctaccccg
gtttttcttgaaaaactgcaacatctgaaggtaaacttactggccatagatgaagcacac
tgtatttctcaatgggggtatgattttagacccggttatctaaaaattgcagatgtaagg
gaacatttgcctaacgtgcctgtgctggctcttactgccacagctactccgcgggttgtg
gacgatattcaggagcaactccgatttgagaaaaaaaacgtttttcaaaaaagttttgag
cggacaaaccttgcttacgtggtaaggaaatgtgaggacaaagaggggcaattggttaaa
atactttcttcggtgcagggaacggctgtggtgtatgtccgaaaccgaaagaaaacacgg
gaatatgcagagcatcttcaaaagaatggaataagtgcagattatttccatgccggtttg
acacaaaaagtgaaggattttcgtcagcagcaatggaagagtggggcatgccgggtaata
gtttccaccaatgcctttggtatgggcattgacaaacctgatgttcgcatcgtggtgcat
atggatgcacccgactctctggaggcttactttcaggaagcgggtcgtgccggtcgtgat
gagaaaaaagcatacgcagtcatgcttttttcacctgccgataaaatgcaactgaacaaa
agcgtaacgacatctttccccgaaaaggaagtaattcataaggtttacgattcgttgtgt
aattttttccaggtggccgttgggcatggtgaaggattggttcttgattttaacattggt
aaattttgcacagctttcgggtttaatatactctcggtgtttaacagtctgaaaattctg
caacgcgccggttatctgtattataccgaagattccgatattccgtcgaaagtgatgatg
cagatgagtgattttgaattgtataagtatcaggtggccaatgcaaaactggatcccttc
atcaaagtattgctcaggagttataccgggttgtttaccgaatatgcttccatcgacgag
gatttgttagctcagcggttaaaggtcacacgtgacgatgtttatcaggctctgttgacg
ctttcgagggctaaggttttgcattacattcctcaacgaagaaccccattgattactttt
ttacatcgcagggaagagttgaggcacattgttttagctcccgaaatttatgaacagcgt
caaaaggaataccggcaaagggtggatgctgtgcttgaatatgcaaccaccacgcacatt
tgtagaagcagattgctgcttcattatttcggacagggaaacagcaacaactgtggccat
tgtgatgtgtgtctcgacaggaaaaagcagaacctcactgacgatgagttttctaaaata
gaagaggccatttataatactttaaatgcggagccaatctcagcggaatctctcacagaa
aagctttcgttcgctcaggataaaacgtggaaagtcattcactggttagaggatgtgggg
gctgttagtgagaatcaggatggagtgatggaatggattggaaaacgatag
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