Alkalitalea saponilacus: CDL62_01860
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Entry
CDL62_01860 CDS
T04906
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDL62_01860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asx03019
]
CDL62_01860
Enzymes [BR:
asx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDL62_01860
Messenger RNA biogenesis [BR:
asx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDL62_01860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASB47985
UniProt:
A0A1T5EWZ3
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All DBs
Position
complement(492374..493606)
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AA seq
410 aa
AA seq
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MRFDKYDFHPQLIRNLAEQGFKKPTDIQYKSIPPILKGEDVLAVAQTGTGKTAAFAIPVI
EKLIHRKRSLANFEVRCMVMVPTHELAMQVAGVFDSLLKGTGLKVLALIGGVDQTPQINR
LKKGVDIMVATPGRMFDLSSQGYLDLKSIEILILDEADHMLELGFYNDMRQLFRNLPKNK
QTLFFSATIDEKIKDLAYGLVRHAVRIHISPKNPVSGKIDHAVTYVEMDHKRFFLERIVR
ENPDSKILVFVRTKVRAERVLKAMERVGLSSETIHSDKDQKNRNSAMSNFREGINKVLIA
TDVSARGVDIPNVEIVVNYDLPEIPENYVHRVGRTGRGVNRGKAVSFCSDEEREILEQIE
EFLTNPIAVINMNTEEYEKSIDFSPAATHDWKSLIDEDLEKGKKKIKKRR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgataaatacgatttccatcctcaactaattagaaatctagctgagcaaggg
tttaaaaagcctaccgatatacaatataaatcgattccacccatcttaaaaggtgaggat
gttttggcggtagcacaaaccggaaccggaaaaactgcagcttttgcgattccggtgatt
gaaaaacttattcacaggaaaagaagtctggctaattttgaagtacgatgcatggtaatg
gttccaactcatgaacttgcgatgcaggtggccggggtttttgattccctgctaaagggg
actgggcttaaggttcttgcattaataggaggggttgatcaaacaccacagattaatcgt
ctgaaaaaaggtgttgatatcatggttgccacaccaggccgtatgtttgatttgtcaagt
cagggctatctggatctaaaatcgattgaaattttaattcttgatgaagctgatcatatg
cttgaactcggtttttataacgacatgcgtcaacttttcagaaatcttcctaagaataag
caaacattgttcttttcagcaacgattgatgaaaaaataaaggatttggcttatggcctg
gtcagacatgcagttcgaattcatatctcacccaagaatccggtttccggcaaaattgat
catgctgttacttacgtggagatggatcataaacggttttttctggagaggattgtcaga
gagaatcccgatagtaaaatattggtttttgtacgtacaaaagttcgtgcagaacgtgtt
cttaaagcgatggagcgagttggactctcctctgaaaccattcacagcgataaggatcag
aagaaccgtaacagtgctatgagtaatttccgggaaggaattaataaggttttgatagct
acagacgttagtgccagaggagtcgatatacctaatgttgagattgtagtaaattatgat
ttgcctgagattccggagaattatgttcatagagtaggacgaacaggtcggggcgttaat
cggggaaaggctgtatcattttgtagcgatgaggaacgtgaaattttggagcaaattgaa
gagtttttaacaaatccaattgccgtaattaatatgaatactgaagagtatgaaaaatca
atcgatttttctcctgcagctacacatgactggaaatcattaatagatgaagatcttgaa
aaaggtaagaaaaagattaaaaaacgcagataa
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