Alkalitalea saponilacus: CDL62_04120
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Entry
CDL62_04120 CDS
T04906
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDL62_04120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asx03400
]
CDL62_04120 (mfd)
Enzymes [BR:
asx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDL62_04120 (mfd)
DNA repair and recombination proteins [BR:
asx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CDL62_04120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Hmw_CFAP97
Motif
Other DBs
NCBI-ProteinID:
ASB48382
UniProt:
A0A1T5HR41
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All DBs
Position
1089386..1092739
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AA seq
1117 aa
AA seq
DB search
MSPSSAPVQKYLHHTSISTIKEWLKTPNGNLFLKGLTGSSVSLIAATLKDNASHLLVADD
KESAAYLYHDLTQLLGETPVFFLPSSYKRSPEYGQPESSQIILRTEALQNLRNQSAGHFF
VTYPEALMEKVPDSETISNQTITVKKGENTDLFFVVDFLNELGFQRADFVYEPGYYSVRG
SILDVFSYSHEEPYRIDFFGDEIESIRSFDIENQLSKTTFEEITIIPKLSSATPDQFISI
NEYIPQSVKFWMNSPSLIFNKMDEIHQKVKSASYKDENDEESRYLPGVKDLINGKLFMEQ
LAGRPFIIWGNPQNSPTVSTIQFNTSPQPLFHKKFSLIEENMRTMIEDGYRIMVLSDNKR
QFERLTQIFSDRGSNLEYEEMHHALHEGFIDHDLKLCIYTDHQIFDRYHKFTLKTDKTRA
ARQSITLKELTRLNPGDYVVHVDHGIGKFGGLVTMQENGKKQEAIQLIYRDNDVLLVNIH
SLHRISKYKGQEGEPPRVNKLGTAAWSKMKEKTKKKVKDIARELIALYARRKSEPGYGFS
ADSFMQNELEASFIYEDTPDQIKATQAVKQDMEEHNPMDRLVCGDVGFGKTEVAIRAAFK
AVADNKQVAVLVPTTILAFQHYHTFRDRLKDFPCRVEYISRLRKASETKGIIKDTSEGKV
DILIGTHRLVGKDVNFKDLGLLIIDEEQRFGVSVKEKLKRLKINVDTLTLTATPIPRTLQ
FSLMGARDLSILNTPPANRHPIFTELHTFDADIIKEAIQHEVERNGQVFFINNRVQNIHE
IEHFVNRLLPNIKTVVAHGQMEGSKLEKIMLEFIDGEHDVLIATTIIESGLDIPNANTII
INNAHQFGLSELHQLRGRVGRSNKKAFCYLLAPPVTTLTNDARRRLKILEEFSDLGSGFQ
IAMQDLDIRGAGNLLGGEQSGFIADIGYETYQRILEEALLELRETEYPETLKHSESHQKT
MKYVTDCQIETDADIRLPEEYVSNIAERMNLYRELDNIKEIEKIEDFRKNTEDRFGELPK
EAEGLLLVVKMRILAESLGMEKISYKNNTVRINFVSNQSSPFYQSSTFGQILLWLQSNHK
KAKMEEKNGKLWLIVSKVSSITDVYQLIEDIRTTQQS
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcccatccagtgctccggtacagaaatatcttcatcacacatccatttcaaccatt
aaggaatggttgaaaacacctaacggaaatcttttcttaaaaggattaaccggaagttcg
gtatctttaattgccgccactttaaaagacaatgcttcgcaccttttagttgccgatgat
aaggaaagtgctgcttatctctatcacgatctcacccagttgctgggtgaaactcctgtc
ttttttctaccatcatcttacaaacgatcgccggaatacggacagcccgaaagcagccag
attattcttcgtacggaagctcttcaaaatctgagaaatcaatcagcaggtcatttcttc
gtgacctatcctgaggcattgatggagaaagttcccgattcagagaccatcagcaaccaa
accattaccgtaaagaaaggtgaaaacacagaccttttctttgtggttgactttttaaac
gaattaggatttcaacgtgcagattttgtttatgaaccggggtattattctgtaagaggc
tccattcttgatgttttcagctattcgcatgaagagccatatagaattgatttttttggc
gatgagattgaaagcatacgctcatttgacattgaaaatcagttgtcgaaaaccaccttc
gaggagattaccatcatacccaaattatcttctgctactccagatcaattcatcagcatt
aatgaatacattccgcagtctgttaaattttggatgaactctccatccctcatttttaat
aagatggatgagattcatcagaaagttaagtctgcgtcttataaggatgaaaatgacgag
gaaagtcgttatttacccggtgtgaaggatttaatcaacggcaagctgttcatggaacag
cttgccggcagaccgtttatcatctggggaaatcctcaaaattctccaactgttagtacc
attcaattcaacacctcgcctcaacctctctttcacaaaaagttctccttgattgaagag
aatatgagaaccatgattgaagacgggtatcgcatcatggtgctctcagacaacaaaaga
cagtttgagcgattaacacaaatctttagcgaccgaggaagtaacctggagtatgaagag
atgcaccacgcgcttcatgaagggtttatcgaccatgatttaaagctctgcatatacacc
gaccaccagatttttgaccgctatcacaaattcacccttaaaaccgacaaaaccagagcc
gcccggcagtcaatcacattaaaagagctaacccggctaaatcccggtgattatgttgtt
catgtggatcatggcattgggaagtttggaggtttggtgaccatgcaggaaaatgggaaa
aaacaggaagccatccaactgatatatcgtgataacgatgtgcttctggtcaacatacat
tcgctgcaccgcatcagcaaatataaaggacaggaaggagaacctccaagggttaacaaa
ctgggtacagcggcttggtctaagatgaaggagaagaccaagaaaaaagttaaagacatt
gcccgtgaattgatagccctttatgccagaagaaaatctgaacccggttacgggttttcg
gccgactcatttatgcagaatgagctggaagcttcatttatttatgaagatacgcccgat
cagattaaagcgacgcaggccgtaaaacaggatatggaagagcacaatcccatggacagg
ttggtttgcggagatgtaggctttggcaaaacagaagtggcaatacgtgcggcttttaaa
gctgtagccgacaataagcaggtagctgtgttggtgcctactaccattttggccttccag
cactatcatacttttcgtgacagactaaaggatttcccatgccgggtagagtacatcagc
agattaagaaaagcatctgaaacaaagggcatcataaaagatacatcagaggggaaagtg
gatatattaattggaacccacagattggttggtaaagatgtaaattttaaggatttgggg
ttactcattatcgatgaggagcagcgttttggcgtatcggtaaaagaaaaactgaaacgg
cttaaaataaatgttgacaccctcactcttactgccacgcccataccgcgcaccctgcaa
ttttcattgatgggagcaagagatttgtccatactcaacaccccaccggccaatcgccat
cccattttcactgaattacatacattcgatgctgacatcataaaagaagccattcagcat
gaagtagaacgaaacggacaggtgtttttcatcaacaacagggttcagaacatccatgaa
attgagcattttgtgaaccggctactcccaaatataaagaccgttgttgcacacggacag
atggaagggagcaaactggaaaaaatcatgctggaatttatcgacggcgaacatgatgtt
ctaattgcaacaaccatcattgaatccggactggacattccaaatgcaaacaccataata
ataaataacgcacaccagtttggtttgagcgagctccaccaattgcggggacgagttggc
aggtcaaacaaaaaagcgttttgctacttattggcaccgcctgtgacaacactgaccaat
gatgcgagacgaaggctgaagattcttgaagaattttccgatttaggcagcggtttccag
atcgccatgcaggatttagacattcgtggtgcagggaatctattgggaggagaacagagt
ggtttcattgccgacataggttatgaaacctatcaacgtattctggaagaagcccttctg
gaactcagagagaccgaataccctgaaaccctgaaacattctgagtcgcatcaaaaaaca
atgaaatatgtaaccgattgccagattgaaaccgatgcagacatcaggttacctgaagag
tacgtgagcaacattgccgaaagaatgaacctctacagggaacttgataatattaaggag
attgaaaaaatagaagacttcagaaaaaatacagaggatcgtttcggagagctgccaaaa
gaagccgaaggacttcttttggtggtaaagatgcgtattttggctgaatcattaggaatg
gaaaagatatcttacaaaaacaatacagtaagaatcaattttgtaagtaatcaatcctca
ccgttttatcagtcaagtacattcggacaaatacttttatggttgcaaagcaaccataaa
aaagccaagatggaagaaaagaatggcaaactatggctgattgtttccaaagtgtcatca
ataacagatgtttaccaactgattgaggatattcggactactcaacaatcttaa
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