KEGG   Alkalitalea saponilacus: CDL62_12380
Entry
CDL62_12380       CDS       T04906                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
asx  Alkalitalea saponilacus
Pathway
asx02020  Two-component system
Brite
KEGG Orthology (KO) [BR:asx00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CDL62_12380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asx03021]
    CDL62_12380
Transcription machinery [BR:asx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CDL62_12380
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 GerE HTH_24 HTH_28 HTH_16 HTH_38 HTH_Mga PF0610-like_N HTH_40 HTH_VMAP-M9 HTH_AsnC-type DUF7123 DUF6362 DUF2774 TnsD HTH_11 HTH_7
Other DBs
NCBI-ProteinID: ASB49875
UniProt: A0A1T5CI89
LinkDB
Position
3216807..3217361
AA seq 184 aa
MQQPPYPEKKLFAQIANGDEKAFEKLFRLFYPMLVNYAVKYLNDREIAENVVQEMFVSIW
EKREALKVDNPRAYLMRAVTNRCFNELKSKKLFYDVDDFQIPEVDQDIPDESLIAEVQSV
ISMLPEQRQKIFRMSRFEGMKYKEIAERLGLSVKTVEAQMGKALQFLREQLPIKIKESGK
GFSN
NT seq 555 nt   +upstreamnt  +downstreamnt
atgcaacaacctccatatcctgaaaaaaaactattcgcgcaaatagccaatggagatgaa
aaagctttcgaaaagctttttcggttgttttaccctatgctggtgaattacgctgtgaaa
tatttgaatgatcgggagattgctgaaaacgttgttcaggaaatgtttgtcagcatttgg
gaaaaaagggaggctttaaaggtggataatccccgggcatacctcatgcgagctgtcaca
aatcggtgttttaatgagttgaaatccaaaaaattgttttatgatgtggatgattttcag
attcccgaggttgatcaggatattccggatgaatcactgattgcagaagtgcaatcagta
atatcaatgctgccggaacagaggcaaaagatctttcgcatgagtcgcttcgaaggaatg
aaatataaggagatcgcagagagattaggtctttctgttaaaactgttgaagctcagatg
ggaaaagctcttcaattcctgagagaacaattgccgataaaaattaaagagagtggtaag
ggtttttccaattaa

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