Alkalitalea saponilacus: CDL62_14500
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Entry
CDL62_14500 CDS
T04906
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDL62_14500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asx03019
]
CDL62_14500
Enzymes [BR:
asx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDL62_14500
Messenger RNA biogenesis [BR:
asx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDL62_14500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Cas3-like_C_2
Utp25_C
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASB50260
UniProt:
A0A1T5HTX4
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All DBs
Position
complement(3818868..3820127)
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AA seq
419 aa
AA seq
DB search
MTFQSLGLIVPISKAITKEGYTQPTPIQAEAIPEILKGRDLIGCAQTGTGKTAAFSIPIL
QLLSEDTENSRQKRAIKCLIVTPTRELAIQIGESISTYGAYTNLKSTVIFGGVNQTSQVK
ALRNGVDILVATPGRLLDLMNQKIISLRDISIFVLDEADRMLDMGFIHDIKKLLAVLPAK
KQSLFFSATMPPPIVKLSAGILKNPVKVEVTPVSSTAETINQSVYFVDKNNKMPLLIEVL
GNEKMSSVLVFTRTKHGADKVVKVLKKNNINAEAIHGNKSQNARQRALSNFKDKTTRVLV
ATDIAARGIDVDNLEYVINFDLPNIPESYVHRIGRTGRAGANGKALSFCDAEEKAYLRDI
EKLISLKVDVVDSHPYPLQDMNPVKTPKQVVNKTGDSFKGNRNSSNRRTNKKSEYRRSA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaatcgttaggtttgattgtgcctatttcaaaagcaattacaaaggaagga
tacacacaaccaactcccatacaggccgaagccatcccagaaatactgaaaggaagagat
ttaataggctgtgcacaaaccggaaccggcaaaacagccgccttttcaattcctattctt
cagttattaagcgaagatacagaaaattctcgtcagaaacgagctattaaatgcctgatt
gttactccaaccagagaattagccattcaaattggagaaagcatttccacttatggtgct
tataccaatttgaaaagtacggtaatatttggcggagtaaatcagacttcacaagtaaag
gcacttcgtaatggtgttgatattttggtagccacaccgggaaggcttttggatttgatg
aatcagaaaattatctctttgcgtgatatctctatatttgttttagatgaagcagaccgt
atgcttgacatgggctttattcacgacataaagaaacttttggcagttttacctgccaaa
aaacagtcactgtttttctcggctaccatgccaccgcccattgttaaattatcggcaggt
attctgaaaaatcctgttaaagtggaggtgacaccagtttcttcaacagccgaaaccatt
aatcaatcggtatattttgtagataaaaataacaaaatgccattattgattgaggtattg
ggcaatgaaaaaatgagctctgtattggtgtttacacgaactaaacacggagccgataaa
gtagtaaaagttttgaagaaaaacaacatcaacgcggaagccattcatggaaacaagtcg
caaaatgcacgtcaacgtgcattatccaattttaaagataaaaccacccgcgttctggta
gccaccgacattgccgctaggggaattgatgttgataacctggaatacgttatcaatttt
gatttaccaaatattccagaatcctacgttcaccgtattggacgaaccggccgcgccgga
gcaaatggtaaagcactctctttttgtgatgctgaagaaaaagcctatttgcgggacatt
gaaaagctgattagcttaaaggtggatgtggttgattcccatccatatcctttacaggat
atgaatcctgtaaaaaccccaaaacaggttgtgaataaaacaggtgattcctttaaaggc
aatcgaaactcttctaatcgaagaaccaataaaaagtctgaataccgaagaagcgcttaa
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