Candidatus Arsenophonus lipoptenae: AUT07_00455
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Entry
AUT07_00455 CDS
T04248
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
asy
Candidatus Arsenophonus lipoptenae
Brite
KEGG Orthology (KO) [BR:
asy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AUT07_00455 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asy03021
]
AUT07_00455 (rpoD)
Transcription machinery [BR:
asy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AUT07_00455 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AMA65026
UniProt:
A0A109QEA0
LinkDB
All DBs
Position
562229..564034
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AA seq
601 aa
AA seq
DB search
MEQNSRSQFKLLVTKGKEQGYLTYAEVNDNLPEDIVDSDQIENIIQMINDMGIQVMEETP
DSDDLILTETTTDDDAVEAATQVLSTVDSEIGQTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCAVAEYPEAIAYLLEQYERIENGEIRLSDIIIGFIDLDTEEDLLPTVAH
IGSMLPEQAINDDDNDENNIDPELALQKFSDLRKQYELTLFEIQKGGRNNINSIIAIEKL
SEIFKQFRLVPKQFDYLVNNMRDMMERVRTQERFIMNLCIKECKIPKKTFISLFSGKETN
LHWLVTAKGMNKLWAKKIVNFEEDIQRSLQKLKQIEEETGLTIEQVKDINRRMSIGEAKA
RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQEIGREPSPEELAQRMLIPED
KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHEVLAGLT
TREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSELLRSFLD
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaactcgcggtcacagtttaagttactagtgactaaaggtaaagagcaaggt
tatttaacctatgctgaggtcaatgataatcttccggaagatattgttgattcagatcaa
atagaaaatattattcaaatgatcaatgatatgggcattcaagtaatggaagaaactcct
gattctgatgatcttattttaacagaaactactactgatgacgatgctgttgaagctgct
acccaagtattatctactgttgatagtgaaataggtcaaacaacagatcctgtacgaatg
tacatgcgtgaaatgggtactgtggaattattaactcgtgaaggtgaaattgatattgct
aaacgtatagaagatggtattaatcaagttcaatgtgctgttgccgaatatcctgaagct
attgcttatttactagaacaatatgagcgtattgaaaatggtgaaattagattatctgat
atcattataggtttcattgatcttgatactgaagaagatttattacccacagtagcacat
ataggttctatgctacctgaacaagctataaatgatgatgataatgatgaaaataatatt
gatccagaattagctttgcaaaaattttcagatcttcgtaaacaatatgaattaacttta
ttcgaaattcaaaaaggtggacgaaataatattaattcaattatagcaattgaaaaatta
tctgaaatttttaagcaatttcgtttagtaccaaaacaatttgattatttagtaaataat
atgcgtgatatgatggaacgagttcgcactcaagagcgattcatcatgaacttatgcatt
aaagaatgtaaaatacctaaaaaaacctttatttctttattttctggcaaagaaactaat
ttacattggttagttactgcaaaaggtatgaataaactttgggctaaaaaaatagttaat
tttgaggaagatatacaacgatctttacaaaaattaaaacaaattgaagaagagactggt
ttaactattgaacaagtaaaagatattaatcgtcgtatgtctattggtgaagcaaaagca
cgtagagctaaaaaagagatggttgaagctaatctacgtttagtaatttctattgctaaa
aaatatactaatagaggtctacaatttttagatttaattcaagaaggtaatattggactt
atgaaggcagttgataaatttgaatatcgtcgtggatataaattttcaacatatgcaact
tggtggattagacaggctattactagatctattgctgatcaagcacgaactatccgtatc
ccagttcatatgattgagacgattaacaaattaaaccgtatttctagacaaatattacag
gaaataggtcgtgaaccttcaccagaagaattagcacaacgtatgttaataccagaagat
aaaatacgtaaagtattaaaaattgctaaagaacctatttctatggaaacacctattggt
gatgatgaagattcacatctaggtgattttattgaagatactactttagagttgccatta
gattctgctacttctgaaagtttacgttcagctactcatgaggtattagctggtttaact
actcgtgaagctaaagttttacgtatgcgatttggtattgatatgaatactgatcatact
ttagaggaagttggtaagcaatttgatgttactcgtgaaagaataagacagattgaagca
aaagctttacgtaagttaagacatccaagtcgttcagaattattacgtagttttttagat
gaataa
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