Apodemus sylvaticus (European woodmouse): 127663571
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Entry
127663571 CDS
T10613
Symbol
Ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asyl03041
]
127663571 (Ythdc2)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127663571 (Ythdc2)
Spliceosome [BR:
asyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127663571 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
Ank_4
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
127663571
NCBI-ProteinID:
XP_052011177
LinkDB
All DBs
Position
13:complement(53292710..53359770)
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AA seq
1437 aa
AA seq
DB search
MSRPSSVSPRPPAPSGGGSGGGGGGGGGPASCGPGGGGRAKGLKDIRIDEEVKIAVNIAL
ERFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHA
MMTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNG
IPQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDD
CFKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTN
GVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDV
NLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTE
WYSAQENTFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACL
SDIWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANV
HSKASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLK
AYHHSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNT
HRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKS
FDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPL
QELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLA
DLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGT
FSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRAR
GGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQ
YKKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNA
LQEPSSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSL
FLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSW
RSNNSRKSSADTEFADGSTTAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSV
KSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTT
PSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEW
IRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTSD
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctcgccgcgtccgccggctcctagtggaggcggctccgga
ggcggtggtggtggcggcggcggccccgcttcgtgtggtcctggaggcggtggccgggcc
aagggcctcaaagacattcgtatcgacgaggaagtgaagatcgctgtcaacatcgctctg
gagcgcttccgatatggtgaccagcgagaaatggaatttccttcttctttgaccagtacg
gaaagagcctttattcaccgactaagtcaatctcttggtttagtttctaaaagtaaagga
aagggagcaaatagatacctaactgtgaagaagaaagatggatcagaaacagctcatgca
atgatgacctgtaatttgactcataatacaaaacatgctgttaggagcctaattcaaaga
tttcctgtcaccaataaagaacgcactgaactcctacctaaaaccgaaagaggaaacgtg
tttgcagttgaagctgaaaaccgagaaatgagcaagacaagcgggcgactcaacaatggc
atacctcaagtccctgtgaaaaggggagagtctgaatttgactccttcaggcagtctttg
ccagtttttgagaaacaagaagaaattgttaaaataattaaggaaaataaagtagttttg
attgtaggagaaactgggtctggaaagaccacacagattcctcagttcctgttagatgat
tgctttaaaaatggcatcccctgccgaatattttgtactcaaccaagacgattagcagct
attgctgtggctgaaagagttgctgcagagagaagggaaagaattggtcaaacaattggt
tatcagatccgattagaaagcagggtttcgccaaagacactcctgacattttgcactaat
ggggtattgcttcgtacattgatggcaggtgacagcacattgtcaactgtgacccatgtt
attgtggatgaagtgcatgaaagggatcgattcagtgattttttacttacaaagttaaga
gatttgttgcaaaagcacccaactttgaaactaattctttctagtgctgccctggatgtg
aatctctttataagatattttggaagctgtccggtgatatatatacagggaagaccattt
gaagtgaaagaaatgtttctggaagatattttaagaactactggatataccaacaaagaa
atgttaaaatacaaaaaggaaaagcagcgagaggagaaacagcagaccaccctcacagaa
tggtactcagctcaagagaatactttcaagcctgaatctcagagacagagagctgttgct
agtgtgtctgaagagtatgacttactggatgatggaggtgatgctgtcttcagccagctg
acagaaaaagatgtgaattgccttgaaccgtggttaatcaaggaaatggacgcctgcctt
tctgatatatggctgcataaagatgttgatgcttttgctcaggtctttcatcttatttta
acggaaaatgttagtgttgattacaggcatagtgagaccagtgcaacagctctgatggtt
gctgcaggacggggctttacgagccaagtagagcaattaattagtatgggagccaatgtc
cacagtaaagcgtcaaatggctggatggctttagattgggctaagcactttggacagaca
gaaattgtggatcttctagaatcttacagtgcttcattggaatttggaaatctagatgaa
agttctttggttcaaacaaatggaaatgacctcagtgcagaagacagagagctgttgaaa
gcttaccatcatagttttgatgatgaaaaagtagacttggatttgatcatgcatcttcta
tataatatctgccatagttgtgatgctggtgcaatattaatttttctacctggatatgat
gaaatcgttggtttgagggatcgcatcctctttgatgataagcgctttgccgacaataca
cataggtatcaagtctttatgcttcattcaaatatgcagacatctgatcagaagaaggta
ttaaaaaatccacctgcaggtgtccgaaaaataatcctttctaccaatattgctgagaca
agcatcactgtcaatgatgttgtctttgttattgattctggcaaggtgaaagagaaatcc
tttgatgcactaaactttgttacaatgttaaaaatggtatggatttccaaagctagtgcc
atacagcgcaaaggcagagcggggcgatgtagacctggcatttgtttccgtctgtttagt
agacttcgatttcagaacatgctggaatttcagacaccagagctcttgagaatgccattg
caggaactttgtttacataccaagctgttagccccagtcaattgtaccattgctgacttc
cttatgaaagcacctgaaccgcctccagctttaattgtaaggaacgctgtgcagatgctt
aagacaatagatgcaatggatgcatgggaagatctgactgaacttggctatcatttggct
gatttgccagtagaaccacatcttgggaaaatggtcctatgtgctgttgttttaaagtgt
ctggaccccatcctcacaattgcctgtacactggcctaccgcgatccttttgtactgcct
acccaggcctctcaaaaacgtgcagctatgctttgtaggaaacgcttcactgcggggacc
ttcagtgaccacatggcacttctgagagcgttccaggcatggcagaaagcacgaagtgat
gggtgggagcgcgccttttgtgaaaagaattttctttcacaagctaccatggaaatcatt
ataggcatgagaacacagttgcttgggcagcttagagcatcaggttttgttagagcacga
ggtggtggtgacattcgagatgttaacacaaactccgagaactgggctgttgttaaagct
gcattggtagcaggcatgtatcctaatttagtccatgtggacagagagaatgtagtattg
acagggccaaaggaaaaaaaagtacgctttcatcccacttcagttctcagtcagcctcaa
tacaaaaagattcctccagccaatggccaggctgcagcgattcaggcgttgcccacggat
tggcttatttatgatgaaatgaccagagctcatagaattgctaatatcagatgttgttca
gcagtgacacctgtcactgtcctggtgttctgtggaccagcgagactggcaagtaacgct
cttcaggagccttcgtccttcagagcggatggcattcccaatgatagcagtgacagtgag
atggaagacagaactacagcgaatttggctgccttgaaacttgatgaatggcttaacttc
aaactagagccagaggctgccagtttattgctacagctcagacagaagtggcatagcttg
tttttacgccgaatgagagcgccatctaaaccttggtctcaagtcgatgaagctactata
cgagcaattatagctgttttaagcactgaagaacagtctgcaggtttacagcaaccatct
ggaattggccagaggccaagacccatgtcttcagaagaacttcctttggcttcatcttgg
agatccaataatagtaggaaaagttcagctgacactgagtttgctgatggatctactact
gcagaaagagtattgatgaaatctccatctccagccttacatccacctcagaagtacaaa
gatagaggaattttacatcctaaacggagtactgatgaccggtcagaccaatcatctgtg
aaatccacagacagcagcagttacccaagtccttgtgctagcccctctcctccgtcctca
ggaaagggctcaaaatctccttcaccgagaccaaacatgcctattcgttacttcataatg
aagagtagcaatctgagaaaccttgaaatttctcaacagaagggtatctggtctacaacc
cctagtaatgagcggaagctaaatcgagcgttttgggagagcagcatggtctacttggta
ttttctgttcaaggatctggacatttccagggattttctaggatgtcttctgagatagga
agggagaagagccaagactggggatcagctggactaggcggagtatttaaagtggagtgg
atacgcaaagaaagccttccctttcagtttgcacaccatttactcaatccttggaatgac
aataagaaagtacagataagcagagatgggcaggagctagaacctcaggttggagaacag
ttgctccagttatgggaacgtcttccattgggagaaaaaactacatctgattga
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integrated database retrieval system
