Apodemus sylvaticus (European woodmouse): 127663731
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Entry
127663731 CDS
T10613
Name
(RefSeq) protocadherin alpha-C2 isoform X1
KO
K16493
protocadherin alpha
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
127663731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asyl03036
]
127663731
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asyl04515
]
127663731
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
127663731
Cell adhesion molecules [BR:
asyl04515
]
Cadherins
Protocadherins
127663731
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_CLSTN
Ig_BT4661_3rd
Motif
Other DBs
NCBI-GeneID:
127663731
NCBI-ProteinID:
XP_052011383
LinkDB
All DBs
Position
13:complement(68816780..69030666)
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AA seq
1006 aa
AA seq
DB search
MEQAGARPGATEHPRPLRSLPQLLFLSFRLLLVLLPGPAASQLRYSVPEEQSPGALVGNV
ARALGLELRRLGPGCLRINHLGAPSPRYLELDLTNGALFVNERIDREALCEQRPRCLLSL
EVLAHNPVAVSAIEVEILDINDNSPRFPRPDYQLQVSESVAPGARFHIESAQDPDVGANS
VQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAALHHLVLTAVDGGIPARSGTA
QISVHVLDTNDNSPAFDQSTYRVQLREDAPPGTLVVKLNASDPDEGSNGELRYSLSSYTS
DRERQLFSIDATTGEVRVSGTLDYEESSSYQIYVQATDRGPVPMAGHCKVLVDIIDVNDN
APEVVLTDLYSPVPEDVALNTVVALLSVNDQDSGSNRKVSLGLEASLPFRLNGFGNSYTL
VVSGPLDRERVAAYNITVTATDGGVPPLTSQRTLQIEISDINDNPPSFLEDSYSIYIQEN
NLPGVLLCTVQATDPDQKENAEVTYSLLDREIQGLPVTSYVSINSASGSLYAVNSFDYEK
FREFFVTVEAQDKGRPPLSSTVTANVYVVDVNDHAPHILYPTSTNTSAAIEMVPRTAPAG
YLVTKVIAMDSDSGQNAWLFYHLVPTSDSDLFKVELHTGEIRITRKIADESGTTFNLTVV
VRDNGEPPLSATVAITVAVVDRVSKMLPDTQRHIKNPRTYSEITLYLIIALSTVSFIFLL
TIIVLSIIKCYRYTAYGTACCGGFCGVRERSPAELYKQANNNIDARIPHGLKVQPHFIEV
RGNGSLTKTYCYKACLTAGSGSDTFMFYNTGAQTGPGPGGAQASVTDNRQLTGQSRHSAG
NLIILKNDALSQNEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSS
ATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPA
NNQIDKSDFITFGKKEETKKKKKKKKGNKSQEKKEKGNSTTDNSDQ
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggcgggcgccagacctggggcgaccgagcatccgcgacccctgaggtccttg
ccccagctgctgtttctgtctttccggctgctgctggtgctgctgccaggcccagcggcc
tcccagctacgatactctgtgccggaggagcagagccccggcgcgctcgtgggcaacgtg
gccagagccttggggctggaactgcggcgcttgggacccggctgtctgcgcatcaaccat
ctgggtgcaccaagcccgcgctacctggaattggacttgaccaacggagcgcttttcgtc
aacgagcgcatagatcgcgaggcactgtgcgagcagcggcctcgctgtctgctcagcttg
gaagtgctggctcacaacccggtggcagtgagcgcgatcgaggtggagatactggacatc
aatgacaactctccgcgcttcccgcggccggattatcagcttcaggtaagcgaatccgtg
gcacctggagcgcggtttcacatagagagcgcacaggaccctgacgtcggcgccaactca
gtgcagacctacgagctcagccccagcgagcactttgagctggaccttaaacccttgcag
gagaatagcaaggtgctggagctcgtgctgcggaagggcctagaccgcgaacaggctgcc
ttgcaccacttggttctcactgcggtggatgggggcatcccagctcgctcaggcacagct
cagatctctgttcatgtcctggacacgaatgacaattctcctgcctttgaccagtctact
taccgtgtccagctgcgggaggacgctcctccaggcacattggtagtgaagttgaacgcc
tcggacccggatgagggttctaatggtgaactcaggtactctttgagcagctatacatcg
gaccgggagagacagctcttcagcatagatgccactacaggggaagtgagagtaagtggg
actctggattatgaggagtcttcttcctaccagatctatgtgcaagctactgaccgggga
ccagtacccatggcgggtcactgcaaggtgttggtggacattatagatgtgaatgacaac
gctccagaagtggtgcttacagacttatacagtccagtgcctgaggatgttgccctcaac
actgttgtggctcttctcagtgtgaatgaccaagattcaggctccaaccggaaagtaagc
ctgggtctggaggcttcactgcccttccggctgaatggctttggaaactcctataccctg
gtggtgagtggcccactggatcgggagcgggtagctgcctacaacatcacagtgacagcc
actgatgggggagtaccaccactcacatctcaaaggacactgcagattgagatctctgac
ataaatgacaacccgccaagcttcctggaggactcctattccatctacatccaggaaaac
aatttgccaggtgtgttgctttgcactgtgcaagccacagacccagatcaaaaggagaat
gcagaggtgacctactcactcctagacagggagattcaagggctgccagtcacctcttat
gtctccattaacagtgccagcggcagcctttatgctgtcaactcctttgactatgagaaa
tttcgagagttttttgtgactgtggaagcccaggataagggaaggccaccactaagcagc
actgtgaccgccaacgtgtatgtggtggacgtgaatgaccacgcccctcatattctatac
cctacctcaactaacacatcagcagccattgagatggtgccacggactgcccctgctggc
tacctggtcaccaaagtcatagccatggattcagactctgggcagaatgcttggctcttt
taccatttagtcccaacttctgactcagatctctttaaagtagaacttcacacaggagaa
attaggattaccaggaagatagcagatgagagtggtaccactttcaacctgactgtggtg
gtccgtgacaatggagagccacctctatcagctaccgtggccattacggtagctgtggtg
gacagggtttctaaaatgctccctgacactcagagacatattaagaatcctcggacatac
tcagagatcacactttatctgataatagcattaagcacagtgtcttttatatttctcttg
acaatcatcgttctgagcatcatcaagtgctaccgctacacagcttatggcacggcatgc
tgtggaggcttctgtggagtgagggagcggagccctgcagaactgtacaagcaggccaat
aacaatatcgatgccaggataccacatggcctcaaagtacagcctcatttcattgaggtt
cgaggcaatggctccctcaccaagacctactgctacaaggcctgcctgacagcaggctca
gggagtgatacttttatgttttacaacacaggggcccagacagggccagggcctggggga
gcccaagcctcagtgactgacaacaggcaactcacaggccaaagtaggcacagtgctggg
aacctgattatcctaaaaaatgatgctctctctcaaaatgagccccgtcagcccaaccct
gactggcgctactctgcctccctaagagcaggcatgcacagctccgtgcacctggaggag
gctggcattctacgggctggtccaggagggcctgatcagcagtggccaacagtatccagt
gcaacaccagaacctgaggcaggagaggtgtcccctccggtgggcgctggtgtcaacagc
aacagctggacctttaaatacggaccaggcaaccccaaacagtccggtcccggtgagttg
ccagacaaattcattatcccaggatctcctgcaatcatctccatccggcaggagcctgct
aacaaccaaattgacaaaagcgattttataaccttcggcaaaaaggaggagaccaagaaa
aagaagaaaaagaagaagggtaacaagtcccaggagaaaaaagagaaagggaacagcacg
acggacaacagtgaccagtga
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