Apodemus sylvaticus (European woodmouse): 127663934
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Entry
127663934 CDS
T10613
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03015
mRNA surveillance pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127663934
09123 Folding, sorting and degradation
03018 RNA degradation
127663934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127663934
03041 Spliceosome [BR:
asyl03041
]
127663934
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127663934
mRNA cycle factors
Stress granule specific factors
127663934
Spliceosome [BR:
asyl03041
]
Complex C
Other components
Complex C specific factors
127663934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_occluded
RBD_RDR6
RRM_3
HATPase_c
YflT
Motif
Other DBs
NCBI-GeneID:
127663934
NCBI-ProteinID:
XP_052011713
LinkDB
All DBs
Position
13:complement(66239111..66240994)
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AA seq
627 aa
AA seq
DB search
MNSSDPGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDGITRRSLGYASVNFE
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFS
AFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
TELGTRTKEFTNVYIKNFGDRMDDETLNSLFGRFGQVLSVKVMTDEGGKSKGFGFVSFER
HQDAQKAVEEMNGKELNGKHIYVGRAQKKMDRHIELKRKFEQVTQDRSIRYQGINLYVKN
LDDGIDDERLQKEFSPFGTITSTKVMTEGGRSRGFGFVCFSSPEEATKAVSEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYIQRMASVRSGRNPIISPYQPAPCGYPVAAVPQTQNCTP
CCPSQNAQPRPSARWTARPPPFPSVPGAIHPAVPRSSFTTVKPSSSHVQVMAAHHITNTS
GQTTCQRPAPVSSAATTPVRSIPQYKYAAGVRNSQQHVNAQLVQQPAAVRVQGQEPWTAS
MLVTAPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLESPESLYSRTEE
AVAILQANQAKEAAQRAVGSTSGVPIV
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaactccagcgacccaggctgccccatggcctcgctctacgtgggggacctgcatcct
gatgtgaccgaggcgatgctctacgagaagttcagctctgccgggcccatcctttccatc
cgggtatacagggacgggatcacacgccgctccctgggctatgcttccgtgaactttgag
cagcctgctgatgccgagcgcgctttggacaccatgaattttgatgtcatcaagggcaag
ccggtccgcatcatgtggtctcagcgtgatccatcacttcgcaggagtggagtaggcaat
gtgttcattaaaaatttgaacaagaccattgataataaagcgctgtatgatacattctct
gcttttggcaatattctttcctgcaaggtggtttgcgatgagaatggctccaagggccat
ggatttgtacattttgagacagaggaggcagcggaaagagccatcgagaaaatgaacgga
atgcttctgaatgaccgcaaagtgtttgttggacggtttaagtctcggaaagaacgagaa
acagagcttggaacgaggaccaaggagtttaccaacgtttacatcaagaactttggggac
cgcatggatgatgagaccctgaatagcctcttcggcaggtttggacaggttctaagtgtg
aaagtcatgactgatgaaggtgggaaatctaaaggattcgggtttgtcagctttgaaagg
catcaagatgcgcagaaagcggtggaggagatgaatggaaaggaactcaatggaaaacac
atttacgttggtcgggctcagaaaaaaatggaccgtcacatagaacttaagcgcaaattt
gaacaggtgacacaagataggagcattagataccagggcattaacctttatgtgaaaaat
ctggatgatggtattgatgatgaacgtctccagaaagaattttctccgtttggaacaatc
accagtacaaaggttatgacagagggtggtcgcagtagaggatttggttttgtgtgtttc
tcctccccagaagaagccacgaaagctgtttcagaaatgaatgggagaattgtggccacg
aaaccactttatgtagctttagcccagcgcaaagaagagcgtcaggctcacctcactaac
caatatattcaaagaatggcaagtgttcgatctgggcggaaccctattatcagcccctat
caaccagcgccttgcggttaccctgtggccgctgtcccacagactcagaactgcactccg
tgctgccctagccaaaatgctcaaccaaggcccagtgcccgctggactgcccggcctcct
ccattccccagtgtgcctggtgctatccacccagcggttcctagatcatcatttactacc
gtaaaaccaagttcttcacatgttcaagtcatggcagcacatcatattactaacacatcg
gggcagacaacgtgtcaacgtcctgccccagtctcttcagctgcaactactcctgtgcgc
tcgattccacagtataagtatgccgcaggagtccggaactcccagcaacatgtgaatgcc
cagttggtgcagcagcctgctgctgttcgtgtacagggtcaggaaccttggactgcttcc
atgttagtaactgctcctcaagagcaaaaacaaatgttgggcgaaaggctgtttcctctc
atccaagccatgcacccaactctggctggtaagatcaccggcatgttactagagattgac
aactcggaaccacttcatatgcttgagtctccagagtctctgtattctaggactgaggaa
gctgtggccatactccaagccaaccaagcgaaagaagctgcccagagagctgtgggcagt
acctctggtgtcccaattgtttaa
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