Apodemus sylvaticus (European woodmouse): 127665227
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Entry
127665227 CDS
T10613
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03015
mRNA surveillance pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127665227
09123 Folding, sorting and degradation
03018 RNA degradation
127665227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127665227
03041 Spliceosome [BR:
asyl03041
]
127665227
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127665227
mRNA cycle factors
Stress granule specific factors
127665227
Spliceosome [BR:
asyl03041
]
Complex C
Other components
Complex C specific factors
127665227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RRM_occluded
RRM_7
RBD_DEAH11
DUF4523
RBD_RDR6
ApbA_C
Motif
Other DBs
NCBI-GeneID:
127665227
NCBI-ProteinID:
XP_052013622
LinkDB
All DBs
Position
14:24555439..24557448
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AA seq
669 aa
AA seq
DB search
MNAEAGTHPMMASLYVGDLHSDVTEALLFEKFSSIGPVLSIRICRDLFTRRSLGYGYVNF
QLPTDAERALDTMNFEVIKGRPIRIMWAQRDPSVRKAGVGNVFIKNLDKSIDNQALYDTF
SAFGNIMSCKVVCDEKGSKGYAFVHFETQEAADKAIEMLNGKILNDRKVFVGRFKSQQER
EAELGAKKFTNVYIKNFGEEVDDGALKELFGQFGKTLSVKVMRDSSGKSKGFGFVSYQKH
EDASKAVEEMNGKEMGGKAIFVGRAQKKVERQAKLKRKFEQQKRERINRYRGVNLYVKNL
DDTIDDEKLRKEFSRFGTITSVKVMVEGRRSKGFGFVCFSSPEEATKAVIEMNGQLVGSK
PLYVALAQGKEERKAHLTNQYMQRMAELRAVPANPFQNAFQPAAGGYYVPEVPQAQGRPP
YYRPNQLAQRRPNPRWQQAWRPQSFQGMPLAPQQSGPPPVLQHLAPTGNAPASRGLPTTT
QRVGSERPDHFGGAGFAQPGLTDSCQSGGVPMAVPTLAPPVTVAATVPGAVAPHKDASSV
HSPHPAIQPLQVPQPGVQVQGQEPLTASMLAAVPPEEQKQMLGQRLFPLIQMMHSDLAAK
ITGMLLELDNSELLHMLESPESLRSKVDEAVEVLKAYDAEKEAAQEVGAAAATTRKKEPK
AKSPLMTSG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgaagccggcacccaccccatgatggcctccttatatgtgggcgatctgcac
tcggacgtcaccgaagccttgctgtttgaaaagttcagctctatagggcctgttctgtcc
atccggatctgccgcgacttgttcacccgccgctccctgggttatggctatgtcaacttc
cagctgccaactgatgccgagagggccttggacaccatgaactttgaagtgattaaggga
aggccaatccgcatcatgtgggctcagagggatccctctgtgagaaaggctggtgtggga
aatgtcttcatcaagaacctggacaaatctatagacaaccaggcgctgtacgacactttc
tctgcctttggaaacatcatgtcctgtaaggtggtttgtgatgagaagggctctaagggc
tatgcctttgtccacttcgagacccaagaggccgccgacaaggccatcgagatgctgaac
ggcaagatcctcaatgaccgcaaagtgttcgtgggcagattcaagtctcaacaagagcgc
gaagccgagcttggtgccaaaaaattcaccaacgtttacatcaaaaactttggagaagag
gtggatgatggggcgctgaaagagctcttcggccagtttggtaagaccctaagtgtcaag
gtgatgagagactcgagtgggaagtccaaaggctttggctttgttagttaccagaaacac
gaagacgccagcaaggctgtggaagaaatgaatggaaaagaaatgggcgggaaagccatc
ttcgtaggccgtgcccagaaaaaagtagaacgccaggccaaattaaaacggaaatttgag
cagcagaagcgggagaggatcaatcggtaccggggagtgaatctctacgtgaagaacttg
gatgacaccattgatgatgagaaattgaggaaagagttttctcgttttggaacaatcacc
agtgtgaaggtaatggtagaaggaagaagaagcaaagggtttggctttgtctgtttctcc
tctcccgaagaggcaaccaaagctgtcatcgaaatgaatggacaacttgtgggctccaag
ccactgtatgtggccctggcccaggggaaggaagagcggaaggctcacctgaccaaccag
tatatgcagcgtatggctgagttgagagcagttcctgcaaaccccttccaaaatgccttc
cagcccgcagctgggggctactatgtgcccgaagttccacaggcgcagggaagacctcca
tactacaggcctaaccagttagcacagaggaggcctaatccacgctggcagcaagcctgg
cgacctcaaagcttccaaggaatgccacttgctccacagcagtctgggcctcctccagtt
cttcaacatctggctccaactggtaatgctccggcctctcgtggccttcctactaccact
cagagagtcggttctgagcgtccagaccactttggtggggctggttttgcccagccaggg
ctgactgacagctgccaatctggaggcgtccctatggctgtgccaacccttgcacctcct
gttacagttgctgccactgttcctggggctgtggctccacacaaggatgcctccagtgtc
cacagccctcatcctgccattcagccgcttcaggtcccccagcctggggtccaagtgcag
ggtcaggagcccctgactgcctccatgctggccgcggtgccccccgaggaacagaagcag
atgctgggccagcgtttgttcccactgatccaaatgatgcattcagacctggctgcaaaa
attactgggatgctgctggaactcgacaactctgagctgctgcacatgctcgagtccccc
gagtccctgcggtccaaggtggatgaagctgtggaggtccttaaggcttatgatgccgag
aaagaagctgcccaggaggtgggcgctgctgctgctacaacaagaaaaaaagagccaaaa
gccaaatcacccctcatgacatccggataa
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