Apodemus sylvaticus (European woodmouse): 127665232
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Entry
127665232 CDS
T10613
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03015
mRNA surveillance pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127665232
09123 Folding, sorting and degradation
03018 RNA degradation
127665232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127665232
03041 Spliceosome [BR:
asyl03041
]
127665232
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127665232
mRNA cycle factors
Stress granule specific factors
127665232
Spliceosome [BR:
asyl03041
]
Complex C
Other components
Complex C specific factors
127665232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_7
RBD_DEAH11
RBD_RDR6
ApbA_C
Motif
Other DBs
NCBI-GeneID:
127665232
NCBI-ProteinID:
XP_052013628
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All DBs
Position
14:24687560..24689241
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AA seq
560 aa
AA seq
DB search
MNAEAGTHPMMASLYVGDLHSDVTEDMLFEKFSSIGPVLSIRICRDLFTRRSLGYGYVNF
QLPTDAERALDTMNFEVIKGRPIRIMWAQRDPSVRKSGVGNVFIKNLDKSIDNQALYDTF
SAFGNIMSCKVVCDEKGSKGYAFVHFETQEAADKAIEMLNGKILNDRKVFVGRFKSQQER
EAELGAKKFTNVYIKNFGEEVDDGALKELFGQFGKTLSVKVMRDSSGKSKGFGFVSYQKH
EDASKAVEEMNGKEMGGKAIFVGRAQKKVERQAKLKRKFEQQKRGRINRYRGVNLYVKNL
DDTIDDEKLRKVFSPFGTITSAKVMVEGRRSKGFGFVCFSSPEEATKALIEMNGRRVGSK
PLYVALAQGKEERKAHLTNQYMQRMAEMRAVPANPFLNAFQPTTVPTLAPPATVAATVPG
AVAPHKDASSVHSPHPAIQPLQVPQPAVQVQGQEPLTASMLAAVPTEEQKLMLGQRLFPL
MQXMHSDMAAKITGMLLELDNSELLHMLESPESLRSKVDEAVEVLKAYDAEKEAAQEVGA
AAATTRKKEPKAKSPLMTSG
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgaagccggcacccaccccatgatggcctccttatatgtgggcgatctgcac
tcggacgtcacggaagacatgctgtttgaaaagttcagctctatagggcctgttctgtcc
atccggatctgccgcgacttgttcacccgccgttccctgggttatggctatgtcaacttc
cagctgccaactgatgccgagagggccttggacaccatgaactttgaagtgattaaggga
aggccaatccgcatcatgtgggctcagagggatccctctgtgagaaagtctggtgtggga
aatgtcttcatcaagaacctggacaaatctatagacaaccaggcgctgtacgacactttc
tctgcctttggaaacatcatgtcctgtaaggtggtttgtgatgagaagggctctaagggc
tatgcctttgtccacttcgagacccaagaggccgccgacaaggccatcgagatgctgaac
ggcaagatcctcaatgaccgcaaagtgttcgtgggcagattcaagtctcaacaagagcgc
gaagccgagcttggtgccaaaaaattcaccaacgtttacatcaaaaactttggagaagag
gtggatgatggggctctgaaagagctcttcggccagtttggtaagaccctaagtgtcaag
gtgatgagagactcgagtgggaagtccaaaggctttggctttgttagttaccagaaacac
gaagacgccagcaaggctgtggaagaaatgaatggaaaagaaatgggcgggaaagccatc
ttcgtaggccgtgcccagaaaaaagtagaacgtcaggccaaattaaaacggaaatttgag
cagcagaagcgggggaggatcaatcggtaccggggagtgaatctctacgtgaagaacttg
gatgacaccattgatgatgagaaattgaggaaagtgttttctccttttggaacaatcacc
agtgcgaaggtgatggtagaaggaagaagaagcaaagggtttggctttgtctgtttctcc
tctcctgaagaggcaaccaaagctctcatcgaaatgaatggacgccgtgtgggctccaag
ccactgtatgtggccctggcccaggggaaggaagagcggaaggctcacctgaccaaccag
tatatgcagcgtatggctgagatgagagcagttcctgcaaaccccttcctaaatgccttc
cagcccacaactgtgccaacccttgcacctcctgctacagttgctgccactgttcccggg
gctgtggctccacacaaggatgcctccagcgtccacagccctcatcctgccattcagcca
cttcaggtcccccagcctgcggtccaagtgcagggtcaggagcccctgactgcctccatg
ctggccgcggtgcccaccgaggaacagaagctgatgctgggccagcgtttgttcccactg
atgcaanagatgcattcagacatggctgcaaaaattactgggatgctgctggaactcgac
aactctgagctgctgcacatgctcgagtcccccgagtccctgcggtccaaggtggatgaa
gctgtggaggtccttaaggcttatgatgccgagaaagaagctgcccaggaggtgggcgct
gctgctgctacaacaagaaaaaaagagccaaaagccaaatcacccctcatgacatccgga
taa
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