Apodemus sylvaticus (European woodmouse): 127665561
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Entry
127665561 CDS
T10613
Symbol
Vps8
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127665561 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asyl04131
]
127665561 (Vps8)
Membrane trafficking [BR:
asyl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127665561 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
Clathrin
zf_RING_Vps8_fungal
zf-RING_2
zf-C3H2C3
zf-RING_UBOX
Beta-prop_WDR3_1st
zf-RING_5
Beta-prop_WDR5
EIF3I
WDR55
zf-C3HC4
PHD
Motif
Other DBs
NCBI-GeneID:
127665561
NCBI-ProteinID:
XP_052013954
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All DBs
Position
15:complement(79275891..79473163)
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AA seq
1428 aa
AA seq
DB search
MESEPDQENLEQNPCARTVEEELNKSFNLEASLSKFSCIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVN
NCVNPMLAFCRGDMVHFLLVKRDESGAIHVTKQKHLHLSYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMTLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRK
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDTVPIIVDYCLLLQRKDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVGSPSLSHMDI
TSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTELSVVL
LNLFFLFSSCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLL
HFDTREFLNVLALTFEDFKHDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQ
LAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAE
KAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSPEEKQSVWQKA
MDHMEELVSLKPCKAAELVATHFSGQIEVVIGQLQNQLLLFKFLRSLLDPREGVHVSQES
LQIPPCITEQFIELLCQFSPDQVIETLQVLESYRLEETIQITQKYQLHEVTAYLLEKKGD
VHGAFLLLLERLQSRLQEMTRQEENTKEDILLKGVEDTMVETIALCQRNSQNLNQQQREA
LWFPLLEAMMAPQKLSGSAAPPHLHCEALKSLTMRVLNSMAAFIALPSILQRILQDPIYG
KGKLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSI
CLQQYKRRQEMADEIIVFSCGHLYHAFCLQSKECTLEMEGQTRWACYKCSSSNKTGTLSD
NPSENKKGRLDSPQVKMSPSYHQSKGDPPARKANSEPVLDPQQMQAFDQLCRLYRGSSRL
ALLMELSQSRGGDSYRPFAGSQSGPAFHSIFQNENFQLQLAPPPVTED
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaaccagaccaggagaatttggaacagaacccgtgcgccaggactgtggag
gaagagttgaacaagtcttttaatttagaagcttccctttcaaaattctcttgcatagat
ctggataaggagctggagttcaaaaatgatctgatcgatgacaaggagtttgatattcct
caggtggatacccctccaactctggaaagcattcttaatgagactgacgatgaagatgag
tcttttgttctggaggaccctaccttgttaaacgtcgacaccattgactctcactcttat
gatacctcatctgtggcgagctcagacagtggggacagggccaacctaaagaggaagaag
aagttacccgattctttctcgctgcatgggtcagttatgcggcattcacttctaaaggga
atatctgcacagatcgtgtctgcggccgacaaagtagatgccggcttgcctacagcaatt
gcggtgtccagtctgatagcagtggggacgtcgcacggattggccttgatatttgatcag
aatcaagcgctgcggctctgcctggggagcaccagtgttggagggcagtatggagccatc
tctgctctcagcatcaacaacgactgctcgagactcctctgtggcttcgctaaaggacag
atcaccatgtgggatttggccagtggaaaacttctcagatcaataacagatgcgcatcct
ccagggaccgcaatcttgcacatcaagttcacagatgatccaactctggcgatttgcaac
gacagtggaggctctgtttttgaactaacatttaagagagtgatgggcgtgcgaacctgt
gagtcgaggtgcctgtttagcggctccaagggtgaagtctgctgcatcgagcccctgcac
tccaagcccgagctgaaggaccatcccatcacgcagttctcgctgctggccatggcatct
ttaacaaagatcctggtcattgggctgaagccatccctgaaggtgtggatgactttcccc
tatggccggatggatccttccagtgtcccgctgctggcctggcactttgtggcagtgaac
aactgcgtgaaccccatgctcgccttctgcagaggcgacatggttcacttcctcctggtt
aagagagatgagtcgggtgcaatacacgtgaccaagcaaaagcaccttcacctgtcctat
gatctgatcaacttcacttggataaactcgcgcacagtcgtgcttttagacagcgtggag
aagctgcatgtgattgatcggcagacgcaggaggaactggagacgatggagatctcagaa
gtccaactggtctacaacagcagccacttcaagtcgctggccacaggcgggaacgttagc
caggccctggctttggttggagagaaggcttgctatcaatccatcagtagctatggagga
cagatcttctacttggggacaaagtctgtgtacgtgatgacgctgaggagctggcgggag
aggatggaccatctcctgaaacaggattgcctcacagaagccttggccctcgcatggtct
ttccatgaaggaaaggcaaaagcagtagtggggctgtcgggggatgtcagcaagaggaag
gccgtcgtggcggatcggatggtggagatcctgttccattatgcagatcgggctctgaaa
aagtgtcctgaccagggaaaaatccaagtgatggagcagcactttcaggatacggtgcct
atcatagtggactactgccttctgctccagagaaaggatcttctatttagccaaatgtac
gacaaattaagtgaaaattccgtggcaaaaggcgtgtttttggagtgccttgagccgtat
atcttaagtgacaaactggtggggattacaccccaggtcatgaaagacttgattgttcat
ttccaagataaaaaactaatggagaatgtgggaagcccctcattgtcccacatggatatc
accagcctggacattcagcaggtggttctcatgtgctgggaaaatcgtctgtatgacgcc
atgatctacgtctacaacagaggcatgaatgagttcatcagtccaatggagaagcttttc
aaagtcatcgccccacctctgaatgcagggaagactcttacagaactttcagttgtgctg
ttaaatctgttcttcctcttttctagctgttgcctggcaggtcgtgcctaccctcttggt
gacattcctgaagatcttgttcccttggttaaaaaccaggtttttgagtttctgattcgc
ctgcattctgtagaagcatcttccgaggaagaagtctatccttatgttcggactttacta
cattttgacacaagagaatttctgaatgtgttggcactgacctttgaagattttaaacat
gataaacaagctgtggaataccagcagcgcattgtggatattttattgaaagtcatggtg
gagaattcagactttaccccatcacaagtggggtgtctctttacgttcctcgctcggcag
ctggcgaagcctgacaataccttgtttgtgaacagaaccctctttgatcaagtcctcgag
ttcctctgtagccctgatgatgactcccgccactctgaaagacagcaggtccttttagaa
ttgctgcaggctggaggcatagttcaatttgaagagagtcggctcatccgcatggcagaa
aaggcagaattctatcaaatctgtgaatttatgtatgagcgagaacaccagtatgacaag
atcattgactgctacctgcacgacccattgagagaggaagaagtcttcaattatatccac
aacatcttatctattcctggccatagtcctgaggagaagcagtctgtgtggcagaaagca
atggaccatatggaggaacttgtgtccctgaaaccctgtaaggctgcagagctggttgct
actcacttttctggacagatcgaagtagtcattggacagcttcagaaccagcttttactt
ttcaaatttttgaggagtcttctggatccaagggaaggcgttcatgtcagtcaggagtcg
ctgcagatcccgccttgcattacagagcagttcattgagctgctgtgccagttcagtcct
gaccaagtcatagagacactgcaggtccttgagagctaccgtctggaggaaactattcag
attacacaaaagtatcagctccatgaagtcaccgcatatctgctggagaagaaaggggat
gttcacggtgcctttctgctgctgctggagagacttcagagcaggctgcaagagatgaca
cggcaggaggaaaataccaaggaggacatcctgctgaaaggtgttgaagataccatggta
gagacaattgctctttgccagagaaattcacagaatttgaatcagcagcagcgagaggcg
ctatggtttccactgttggaggcgatgatggcaccacagaagctgtctggctcggctgct
cctcctcatctgcactgtgaggctctgaagtctctgaccatgcgggtcctcaacagcatg
gcggcgttcatcgccctgccgtccatcctgcagagaatcttgcaggacccaatttatgga
aaagggaaacttggagaaatccagggccttattctggggatgctggacacctttaactat
gagcaaaccttgctagaaacaacagccagcctcctgaaccaggatctccattggtcactg
tgtaacttgagagcatcagtatccagaggactcaatcccaaacaggattactgttctata
tgtctacagcagtacaaacgacgccaagagatggctgatgagattattgtctttagctgt
ggccatttgtatcatgcattctgtctccagagtaaggagtgcaccctggaaatggagggc
cagacaaggtgggcgtgttacaagtgcagctcaagtaacaaaacggggacactcagtgac
aatccctctgaaaataagaaggggcgcctggactcgccacaggtaaaaatgtctccctcg
tatcaccagtccaaaggggatcctcctgccaggaaggcaaactcagaacctgttctggac
ccacagcaaatgcaagcctttgatcagctctgccggctctaccgaggaagctctaggctg
gctctcctaatggagctctcccagagccgaggcggcgacagctacaggccgttcgcgggc
tcccagagcgggcctgctttccacagcatcttccagaacgagaacttccagctgcagctt
gcgcctccacctgtgacggaagactga
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