Apodemus sylvaticus (European woodmouse): 127665966
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Entry
127665966 CDS
T10613
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
asyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127665966 (Pcf11)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127665966 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
127665966
NCBI-ProteinID:
XP_052014560
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Position
1:113599590..113624826
Genome browser
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSAPSKLHVPQIPTMAVKAPHQVPVQPDKNRAGPSLQMQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTINQSDVKTSKNVPSEKLNSSKQDKSKSGERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMSKRDPRLKKHLQDKAEGKDEDV
KEKRKTAEKKDKDEHMKSSEHRLVGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMEEFPPPSR
EERNIKRSAKQDVRDPRRLKKMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPKEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRSYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGGGIRFEGPL
LQQGVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPIVQQGGGMRF
EGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRIDSFNQS
GPYNDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRASGHYFDE
KNLQNSQFGNFGNLPTPMSVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNP
SGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAVAQSAPEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTESDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggcggaggccggagctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgttggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaatctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttccagttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttct
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgcctcctaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataagtcgcctgatgagccttcaacacctggcacagtggtc
agttcccccagtatctccactcctcccattgtacctgacatacaaaagaatcttacccaa
gaacaactaataaggcaacagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctctgagcgtt
cagcaggagacagccaacttgggtcctggatcagcgccatctaaactacatgttccacaa
attcccactatggctgtcaaagctccccatcaggtccctgtacaacctgacaaaaaccga
gcgggtccatccttacaaatgcaagacttgaaaggaactaaccgggatccccgtcttaac
aggatgagccaacattcttcccatggcaaagagcagagtcataggaaagaatttgtaatg
aacacaataaaccagtctgatgttaaaacaagtaagaatgtaccctctgaaaaactaaat
tcatccaagcaagataaaagtaaatcaggtgaaagaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaagaatcaagaatctgaaagtatgaggttgtctgatatgagtaaa
agagatccacgattaaagaagcatcttcaggataaagctgagggcaaagatgaagatgta
aaagaaaagagaaaaactgcagaaaagaaggataaagatgaacacatgaaatcgtctgaa
cacaggttggttggaagtagaagtaaaatcataaatggcattgtccaaaaacaagacatg
gttacggaagaattggaaaaacaggggacaaaaccagggagatcaagtacgagaaagaga
tcaagatcaaggtcacctaagtctcggtcaccaattatacattctccaaagagaagagat
agacggtcacccaaacgaaggcaaagaagtatgtctcccactttggcacccaaagctgga
aagatgcgtcagtcgggacttaagcagtcacacatggaagaattcccaccaccttccagg
gaagaaagaaatattaagagaagtgctaagcaggatgttcgagatcccagacgactgaaa
aagatggatgaggaccggcctcaagaaactgcaggtcaacattctatgaagtcaggtggt
gacccaaaggagaatatagagaactggcaaagctctaagtctgccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaacctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcaaattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctaaagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgttcttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaggagcagaggtcaccattcaatgat
cgatttccacttaagcgacctagatatgaagattcagataaaccatttgtagatggccca
gcatcaagatttgctggccttgatacaaatcagcgacttacagctctagctgaagaccga
ccattatttgatggacctggtaggccatctgtcacgagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggacctatgagatttgaagggcca
caaggtcagttaggaggtgggtgccctttgagatttgaaggtcctccaggaccagtagga
actcctctgcggtttgaagggccaattggtcaaggaggaggaggtggctttcgatttgaa
ggttcacctagtctgaggtttgaaggatctgcaggtggtttacgatttgaaggaccaggg
ggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtgggtggtctc
aggtttgagggacctcatggacagcctgtgggcagtcttagatttgataatcctcgaggc
cagcctgtaggaggacttagatttgaagggggtcatggtccatcaggggctgcaattaga
tttgatggacctcatggtcagccaggtggtggtggtggtatcagatttgagggccctttg
ctacagcaaggagttggaatgaggtttgaaggtccccatggtcagtctgtagctggtctg
aggtttgaaggacataatcaattaggtgggaaccttaggtttgagggaccacatggtcaa
ccaggggttgggatcaggtttgaaggacctatagttcaacaaggaggtggaatgaggttt
gaaggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcct
agatttgaaggttgtcattctttaaggtttgatggacagccaggtcagccatcacttttg
ccaagatttgatggattacatggccagccaggtcctagatttgaaagaactggtcagcca
ggtccacagagatttgatgggccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatgggccacaacaccagcaagcatcaagatttgatattcctcttggt
ctacaaggaactcgatttgacaatcatccttcacaaagaattgactctttcaatcagtct
ggcccatataatgatccacctggcaatgcttttaatgtcccatctcaaggattacagttc
caaagacatgaacaaatatttgatacacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagaatttcccaaatcccattaacagagcttccggacactattttgatgaa
aagaatcttcaaaattctcagtttggaaactttggcaatttacctacaccaatgtcagta
ggaaatattcaggcatctcaacaggttctgactggtgttgctcagccagtagcgtttggc
caaggacaacagtttttaccagttcatccacagaatcctggagcttttattcaaaatcct
tcaggcggtcttcctaaggcatatcctgataatcatcttagtcaggtggatgtaaatgaa
ttgttttcaaaactgctaaaaacaggaattctcaaattgtcacagcctgattcagctaca
gcacaggtaaatgaggctgttgctcagtctgcccctgaggaggaggaggatcagaatgaa
gatcaagacgttccagatcttactaatttcacaattgaagaattgaagcaacgttatgac
agtgttataaatcggctgtatactgggattcagtgttactcttgtggaatgaggtttacg
acatcccagacagatgtttatgctgatcacttggactggcattatcggcaaaatagaact
gagaaagatgttagcagaaaagtcactcatagacgatggtactacagtctgacagactgg
atagaatttgaagaaatagctgatttggaagaacgtgcaaaaagccagttttttgaaaag
gttcatgaagaggttgtccttaaaactcaggaggctgctaaagaaaaggagttccaaagt
gtacctgctggacctgctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
cagtactgggatgaagaggaggaagaatggcacttaaaaaatgctattcgagtagacgga
aagatttaccatccatcatgttatgaagattatcaaaatacatcttcatttgattgcaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aacgaattgcaagaaccctgtgaaagtcccaaagttaaggaagaacaaattgatgcccca
ccagcttgttcagaagaaagtgtagcaacacccactgaaattaaaacagaaagtgataca
gttgagtcagtttaa
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