Apodemus sylvaticus (European woodmouse): 127667573
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Entry
127667573 CDS
T10613
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04151
PI3K-Akt signaling pathway
asyl04510
Focal adhesion
asyl04512
ECM-receptor interaction
asyl04518
Integrin signaling
asyl04974
Protein digestion and absorption
asyl05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127667573 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127667573 (Col2a1)
04518 Integrin signaling
127667573 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127667573 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
127667573 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
127667573 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
asyl00536
]
127667573 (Col2a1)
Glycosaminoglycan binding proteins [BR:
asyl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127667573 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
127667573
NCBI-ProteinID:
XP_052016638
LinkDB
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Position
17:72161541..72190494
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIAAVLRCQGQDAQEAGSCLQNGQRFKDKDVWKPSPCSICVCDTG
NVLCDEIICEDPDCLNPEIPFGECCPICPADLATASGKLGPKGQKGEPGDIKDIIGPKGP
PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGGNFA
AQMASGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPAGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGYKGEQGPKGETGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGAAGPDGPAGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGSRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPAGPPGPAGKDGPKGVRGDTGPPGRAGDPGLQGPAGAPGEKGEPG
DDGPSGSDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEPGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEADSTLRQHDVEVDATLK
SLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPRKNWWSSKSKERKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcgctggtgctgctgacgctgctcatcgccgcggtc
ctacggtgtcagggccaggatgcccaggaggctggcagctgtctgcagaatgggcagagg
tttaaagataaggatgtatggaagccctcgccttgcagcatctgtgtgtgtgacactggg
aatgtcctctgcgatgaaataatctgtgaagacccagactgcctgaaccccgagatcccc
ttcggagagtgctgtcccatctgcccagctgatctcgccactgccagtggaaaattaggg
ccaaaggggcagaaaggagaacctggagacatcaaagatatcataggacccaaaggacct
cctggccctcagggacctgccggtgaacaaggacccagaggtgaccgtggtgacaaggga
gaaaagggtgcacctggaccccgtggcagagatggagagcctggtacccctggaaatcct
ggcccccctggccctccaggcccccctggtccccctggccttggtggaggaaacttcgca
gcccagatggcttcaggctttgatgagaaggctggcggtgcccagatgggagtcatgcaa
ggccccatgggccccatgggacctcgtggaccgccaggccctgccggtgctcctggccct
caaggatttcaaggcaatcccggtgaacctggcgagcctggtgtctctggtcccatgggt
ccccgcggtcctccaggccctgccggaaaacctggtgacgatggtgaagctgggaagcct
ggaaagtctggggagagaggcctccctggccctcagggtgctcgtggattcccaggaacc
ccgggtcttcccggtgtcaagggtcacaggggttacccaggcctggatggtgctaaagga
gaagccggtgcgcccggtgtgaagggtgagagtggttcccctggtgagaacggatccccg
ggcccaatgggtccccgtggcctgccaggcgagagaggacggactggccctgccggtgct
gctggtgcccggggtaacgatggccagccaggccccgcgggacctccgggtcctgttggt
cctgcaggcggtcctggcttccctggtgctcctggtgccaagggcgaagctggtcccact
ggtgctcgcggtcctgaaggtgctcaaggtcctcgtggcgagcctggcaatcccgggtcc
cctgggcccgcgggtgcttctggtaacccgggcactgatggtattcctggagccaaagga
tctgctggtgctcctggaattgctggtgctcctggcttccctgggccccggggccctccc
ggtcctcaaggtgcaactggtcctctgggccccaagggtcaggcgggtgagcctggcatt
gctggatacaaaggtgaacaaggccccaagggagagactggacctgctgggccccaggga
gcccctggccccgctggtgaagaaggcaaacggggtgcccgaggagagcccggtggtgct
gggcccatcggcccccctggagagagaggtgctcctggcaaccgtggtttcccaggtcag
gatggtttagcaggtcccaagggtgcccctggagagcgagggcctagtggcctggctggt
cccaagggagccaatggtgacccgggtcgtcctggagaacctggtcttcctggagccagg
ggtcttaccggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cctggtgaagatggtcgccctggacctcccggtcctcagggagctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggcgagcctggcaaagctggtgagaag
ggactggctggtgctcctggtctgagaggtcttcctggaaaggatggtgagacaggagcc
gcaggaccccccggccccagtggacctgctggtgaacggggcgagcagggcgctcctggg
ccatcagggttccagggacttcctggccctcccggtcccccaggtgaaggtggaaagcaa
ggtgaccagggtattcctggtgaagctggagcccctggccttgtgggtccccggggtgag
cgaggtttcccaggtgaacgtggctctcccggcgctcagggcctccagggtccccgaggc
ctccctggcactcccggcactgatggccccaaaggtgcagctggcccagatggacccgcc
ggggctcagggccctccaggtctacagggaatgcctggcgagaggggagccgctggtatt
gccgggcccaagggcgacagaggtgacgttggcgagaaaggcccagagggagctcctgga
aaggatggtagccgaggtctgactgggcccatcggacccccaggcccagcaggtgccaat
ggtgagaagggagaagtcggacctcctggcccttcaggaagtactggagctcgaggtgcc
ccgggtgaacgtggagagactgggccacctggacctgctggattcgctggccctcctggc
gccgatggccagcctggtgccaagggtgagcaaggagaagctggacagaaaggagatgct
ggtgcccccggcccacaaggcccctctggagctcctgggccacagggtcctactggagtg
accggccctaagggagcccgaggcgcccaaggccccccgggagccactggattccctgga
gctgctggccgagttggacccccaggttctaatggcaaccctggacctgccggtcctcct
ggtcctgctggaaaagatggtcccaaaggtgttcgaggagacactggcccccctggcaga
gctggtgaccctggtcttcaaggtcctgcaggagctcctggcgagaaaggagagcccgga
gatgatggtccctccggttctgatggtcccccaggtccccaggggctggctggtcaaagg
ggcattgttggtctgcctggtcagcgtggcgagagaggattccccggccttcctggccca
tcgggtgagcctggcaagcagggtgcacctggggcatctggagacaggggtccgcctggt
cccgtgggacctcctggcctgacagggcctgcaggtgaacctggacgagagggcagccct
ggtgctgatggaccccctggcagagatggtgcggctggagtcaagggtgatcgtggtgag
actggagcactaggtgcccctggagctcctggacccccaggctctcctggccctgctggc
ccaactggcaaacaaggagacagaggagaggctggtgcacaaggtcctatgggcccctca
ggacctgctggagctcgtggaattgcaggccctcaaggcccccgaggtgacaaaggagaa
tctggagagcctggcgagaggggactgaagggacaccgaggtttcactggacttcagggt
ctgcctggccctccgggtccttctggagatcagggtgcttctggccctgctggtccttct
ggccctagaggtccacctggccctgttggtccctctggtaaagatggctctaacggaatc
cctggccccattgggcctccaggtccccgtggacgctcaggagaaactggccctgccggt
cctcctggaaatcctggtccccctggccctccaggtcctcctggtcctggcatcgacatg
tcagcctttgctggcttagggcagagagagaagggccctgaccccctgcagtacatgcgg
gccgatgaggcagacagtaccctgagacagcacgacgtcgaggtggacgccacactcaag
tccctgaacaaccagatcgagagcatccgcagccccgacggctcccgcaagaaccctgct
cgcacctgccaagacctgaaactctgccacccggagtggaagagcggagactactggatt
gatcccaaccagggctgcaccttggacgccatgaaagttttctgcaacatggagaccggc
gagacctgcgtctaccccaacccagcgtctgtgcctcggaagaactggtggagcagcaag
agcaaggagaggaagcacatctggtttggagagaccatgaacggtggcttccacttcagc
tatggcgacggcaacctggctcccaacaccgctaatgtccagatgactttccttcgtcta
ctgtccaccgagggctcccagaatatcacctaccactgtaagaacagcatcgcctacctg
gacgaagcggctggtaacctcaagaaggccttgctcatccagggttccaatgatgtagag
atgagggctgagggcaacagcaggttcacgtacacggccctgaaggacggctgcacgaaa
cacacgggtaagtggggcaagaccatcatcgagtaccgatcccagaagacctcccgcctt
cccattattgacatcgcgcccatggacatcggagggcccgaacaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
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