Apodemus sylvaticus (European woodmouse): 127668341
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Entry
127668341 CDS
T10613
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03013
Nucleocytoplasmic transport
asyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127668341 (Upf1)
03015 mRNA surveillance pathway
127668341 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127668341 (Upf1)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127668341 (Upf1)
5.6.2.5 RNA 5'-3' helicase
127668341 (Upf1)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127668341 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
127668341 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127668341
NCBI-ProteinID:
XP_052017822
LinkDB
All DBs
Position
18:70997193..71018559
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNLTQWPDYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacactcaccttcttggacactgaagag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagactcagacgccccccggcggccccggcggcgcgggaggcccgggtggagcg
ggcgcaggcggcgcggccggccagctcgacgcgcaagttggaccagagggcatcttgcag
aatggggctgtcgatgacagtgtggccaagaccagccaactgttggctgagctgaacttt
gaggaagatgaagaggacacgtactacaccaaggacctccccgtccacgcctgcagttac
tgcggaatccatgatcctgcctgcgtggtttactgtaataccagcaagaagtggttctgc
aatggccgaggaaatacttctggcagccacattgtaaatcacctcgtgagggcaaaatgc
aaggaagtgacgctgcacaaggacgggcctctgggcgagacagtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctgggcttcattcctgccaaggccgactctgtggtg
gtgctgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtgaagatt
ccctccgagcaggagcagctaagagcacggcagatcactgcccagcagatcaacaagctg
gaggagctctggaaggaaaatccctcagccaccctggaggacctggagaagccaggcgtg
gacgaggagccacagcatgtgctgctgcggtacgaggatgcttaccagtaccagaacatc
ttcgggccgctggtcaagctggaggctgactatgacaagaagttgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggcgatctggcgcccctgtgg
aaggggatcggccacgtcatcaaggttcccgataacttaactcagtggccagattacggg
gatgagattgctattgagctccgcagcagcgtgggtgcccctgtggaagtgactcacaac
ttccaagtggattttgtgtggaagtcaacctcttttgataggatgcagagcgcactgaag
acctttgctgtggacgaaacctctgtgtctgggtatatttaccacaagctgctgggccac
gaggtggaggatgtggtcatcaagtgtcagctgcccaagcgcttcacagcccaggggctg
cctgacctcaaccactctcaggtgtatgctgtgaagactgtgctgcagagaccactcagc
ctcatccagggccctccaggcacagggaagactgtgacttcagccactattgtctaccac
cttgctcggcagggcaacgggcctgtgctggtctgtgctccaagtaacatcgccgtggac
cagctcacagagaagatccaccagacggggctgaaggtcgtacgcctgtgtgccaagagc
cgagaggccattgactccccggtgtccttcctggctttgcacaaccagatcaggaacatg
gacagcatgcccgagctgcagaagctgcagcagctgaaggatgagacaggcgagctgtca
tctgcagatgagaagcggtaccgtgcgctcaagcgtacagccgagagagaacttctcatg
aatgcagatgtcatctgctgcacatgtgtgggtgctggtgacccgaggctggccaagatg
cagttccggtccatcctcattgacgagagcacacaggctaccgagcccgagtgcatggtg
cccgtggtccttggggccaagcagctgatcctcgtgggtgaccactgccagctgggccca
gtggtgatgtgcaagaaggcagccaaggccgggctgtcacaatcgctcttcgagcgcttg
gtggtgctgggcatccggcccatccgcctgcaggtgcaataccgcatgcaccctgcactc
agcgccttcccgtccaacatcttctacgagggctcattgcagaatggtgtcactgcagcg
gaccgtgtcaagaagggctttgacttccaatggccacagcctgacaagcccatgttcttc
tacgtgacacagggccaggaggagattgccagctctggcacgtcctacctcaacaggacg
gaggcagccaatgtggagaagataacgacgaagctgttgaaggcaggggcaaagcctgac
cagattggcatcatcacgccgtacgagggccagcgctcctacttggtgcagtacatgcag
ttcagcggctccctgcacacaaagctctaccaggaagtggagattgccagtgtggatgcc
ttccagggccgggagaaggacttcatcattctgtcctgcgtgcgcgccaacgaacaccag
ggtattgggttcctaaacgacccccggcgtctcaatgtggctctcaccagagcaagatac
ggcgtgatcattgtgggtaacccaaaggcgctgtcgaagcagcccctgtggaaccacctg
ctgagctactacaaggagcagaaggcgctggtggaagggccgctcaacaacctgcgggag
agcctcatgcagttcagcaagcctcgaaaactcgtcaacacagtcaacccgggggcccgc
ttcatgactactgccatgtatgatgcccgggaggccatcatccccggatctgtctatgac
cgcagcagccagggccggccctcgaacatgtacttccagacccatgaccagatcagcatg
atcagcgcaggccccagccacgtggccgccatgaacatccccatccccttcaacctggtc
atgccccccatgccgccaccgggctacttcggacaggccaacgggccagctgctggtcgg
ggcaccccaaaaagcaagactggccgtgggggccgccagaagaaccgctttgggcttcct
gggcccagccagaccacccttcccaacagccaggccagccaagacgtggcctcccagccc
ttctcacagggagccctcacacagggctacgtgtccatgagccagccctcccagatgagc
cagcctggcctctcccagccggaactgtcccaggacagctacctcggtgatgagtttaag
tcacagatagatgtggcactctcacaagactccacataccagggagagcgggcgtaccag
cacggcggcgtcaccgggctgtcccagtactag
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